Bioinformatics Pipeline for dRADseq Data
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Updated
Sep 23, 2017 - Perl
Bioinformatics Pipeline for dRADseq Data
Small program in perl. Assignment for Binf2010 at UNSW. Takes in a fasta file, searches it for open reading frames, selects the largest 3 and translates them into proteins. After this is searches the PDB database for matches and returns the results as a CSV. A couple features ontop of the spec, read the file for more information.
RADtyping: a user-defined perl procedure for performing de novo RAD genotyping in mapping populations.
We are taking existing orthoMcl Software Written Perl and Translating it to Python
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EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
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A framework for semi-automated analysis of Amplicon Sequencing data
This repository contains the code used for screening putative extracellular Contractile Injection System (eCIS) loci from genomic sequences.
Development of molecular markers in non-model organisms
Perl, Bash shell, and R scripts for m6A-SAC-seq data analysis.
Hi-C data processing pipeline (with Dragen, HiSAT2, or STAR aligner)
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