Finite State Projection algorithms for chemical reaction networks
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Updated
May 12, 2024 - Julia
Finite State Projection algorithms for chemical reaction networks
Sea Urchin Endomesoderm GRN Modeling and Testing of Model Behavior and Robustness under Genetic Perturbations
Implementation of a PINN solver for biological differential equations
A repository for the final project in MathBio class, exploring the dynamics of natural pattern adaptation through the lens of a cellular automata model. Contains code, documentation, and resources related to the project.
Bayesian inference of stochastic cellular processes with and without memory in Python.
iCodon customizes gene expression based on the codon composition
Mini project (5ECTS) as part of the MSc Biology (University of Groningen), aiming to increase the efficeincy and speed of DAISIE model simulations.
A Game Theoretic Approach For Rendering Immersive Experiences In The Metaverse
PAR2 Activation and calcium signaling Reaction Model in PySB
Code behind the work "Multiple Synaptic Contacts Combined with Dendritic Filtering Enhance Spatio-Temporal Pattern Recognition of Single Neurons", bioRxiv 2022
Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
R language for Human Performance Analysis
Code behind the work "Single Cortical Neurons as Deep Artificial Neural Networks", published in Neuron 2021
A prototype of a probabilistic research model for a math professor. It is meant to simulate a white blood cell chasing a bacteria.
Python toolkit for Bayesian parameter inference, model calibration, and model selection using Nested Sampling
4 dimensional model for neuronal modelling in Julia
Simulation of agents competing for resources with different strategies
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