The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.
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Updated
Apr 7, 2024 - Python
The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.
The second part of https://github.com/npanuhin/BIOCAD
Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide
Map and post-process your bams for SNP calling
Small GATK alignment and variant calling pipeline using python
The DKFZ alignment workflow plugin originally developed at the eilslabs
Scalable and High Performance Variant Calling on Cluster Environments
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