Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.
-
Updated
Jun 6, 2024 - MATLAB
Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.
Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.
Pipeline for inference of Granger-causal relations in molecular systems to study actin regulation in lamellipodia
u-inferforce (Traction Force Microscopy) is a MATLAB software that reconstructs traction forces of cells adhered on elastic gel doped with beads.
A Matlab software package to do 2D cell segmentation.
A Matlab package for segmentation of filament and the orientation.
Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting events resulting from occlusion or genuine aggregation and dissociation events
Analyze local cell edge motions (e.g. protrusion and retraction) and to locally sample intracellular fluorescence signals in 2D fluorescence microscopy data.
This focal adhesion package is a software that tracks, segments, classifies and analyzes the time series of focal- and nascent adhesions in an adhesion time-lapse images.
Processing of raw ratiometric biosensor images (for example based on FRET) into fully corrected "ratio maps" or "activation maps" — images showing the localized activation of the biosensor.
clathrin-mediated endocytosis analysis
MATLAB codes developed in Courtemanche lab at University of Minnesota for automating analysis of actin filament properties from single molecule microscopy images.
3dCellShape implements measurement and analysis of geometric features on extracted 3D volumes of single cells from fluorescent imaging data.
Fine-grained, nonlinear registration of live cell movies reveals spatiotemporal organization of diffuse molecular processes
Growth Cone Analyzer pipeline
Quantitative Fluorescent Speckle Microscopy
PIV-based tools for measuring collective cell migration
A MATLAB toolbox for culture experiments to monitor cells & obtain/plot growth rate data
analyzing images of mechanical stimulation on low elastic modulus dishes (mSLED)
Add a description, image, and links to the cell-biology topic page so that developers can more easily learn about it.
To associate your repository with the cell-biology topic, visit your repo's landing page and select "manage topics."