Characterization of Germline variants
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Updated
Mar 15, 2022 - Python
Characterization of Germline variants
Clinically Adapted Model Enhanced from LLaMA
A collaborative learning framework for empowering biomedical research
A reported 96,480 people were diagnosed with melanoma in the United States in 2019, leading to 7230 reported deaths. Early-stage identification of suspicious pigmented lesions (SPLs) in primary care settings can lead to im- proved melanoma prognosis and a possible 20-fold reduction in treatment cost. Despite this clinical and economic value, eff…
Integrating AI to Clinical Workflow
Official source for Spanish pretrained biomedical and clinical language models and resources made @ BSC-TEMU within the "Plan de las Tecnologías del Lenguaje" (Plan-TL).
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
This project develops compact transformer models tailored for clinical text analysis, balancing efficiency and performance for healthcare NLP tasks.
Disambiguating biomedical and clinical concepts with word embeddings
Clinical oncology tumor board decision support system made by the Decider project.
PyTorch library for MIMIC III Benchmark experiments
Sobolev alignment of deep probabilistic models for comparing single cell profiles
Short scripts to demonstrate data available from MolecularMatch API (api key needed). Data includes clinical trials, drugs, publications, molecular information, bioinformatics, report generation and more.
A ward round assistant who helps medical personnel to query medical record data with LLM
MIMIC-III corpus parsing and section prediction with MedSecId (COLING paper)
Identification of cancer-causing variants
Clinical Data Natural Language Processing
Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
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