A fork of the project Excavator2 from sourceforge.
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Updated
Jun 29, 2017 - R
A fork of the project Excavator2 from sourceforge.
Epicopy R package for CNV identification from methylation microarrays.
A tool to call CNV (Copy Number Variation) from bulk ATAC-Seq data
This is a group project
An R package to integrate and analyze CNV calling results from multiple methods in a uniformed and standardized manner
R Package to compare copy number variant (CNV) results from multiple samples or methods
R Package to compare copy number variant (CNV) results from multiple samples/methods
PYRUS is a plotting tool that uses tabix files to create line graphs from bed file data. Utilization of PYRUS includes having a quick plotter for copy number variation within a given chromosomal range of a referenced bed file.
Powerful CNV calls filtering pipeline. Focused on fixed loci calling, before visual inspection.
This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.
CNV detection for prokaryote genomes using NGS sequencing data
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
Workflow for Sequenza, cellularity and ploidy
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