A pipeline and GUI that can be used to create and view intuitive graphs of isolates.
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Updated
Jul 2, 2024 - R
A pipeline and GUI that can be used to create and view intuitive graphs of isolates.
An R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging probabilistic models.
Analysis code used for Rabadam G, Neely J, et al. JCI Insight, 2024.
Contains code related to my multi-omics integration project at WEHI.
Advanced bioinformatics analysis of RNA sequencing data and genomic databases using R. Explore allelic imbalances, SNP variants, and phylogenetic trees to uncover genetic insights and visualize complex data interactions.
An R Package for Geneset Enrichment Workflows
A classifier prototype that predicts cancer cell line sex and genotype from gene-based sequencing read counts.
Intuitive analysis and visualisation of differential alternative splicing based on beta distributions.
Computational biology functions I made to help in my analyses.
RNAseq pipeline for Pasini's lab written in snakemake
R Shiny based interface for browsing fitness data from transposon or CRISPRi libraries
Using Single Cell Transcriptomics to Analyze how COVID Effects our Heart
iCodon customizes gene expression based on the codon composition
Computational Genomics Final Project: Analysis of RNAseq data to determine differentially expressed genes in Dengue and Zika virus infection.
Subtelomeric 5-enolpyruvylshikimate-3-phosphate synthase copy number variation confers glyphosate resistance in Eleusine indica
Subtelomeric 5-enolpyruvylshikimate-3-phosphate synthase copy number variation confers glyphosate resistance in Eleusine indica
A package to perform Random Walk with Restart on different types of networks
Analysis of metagenomic data sequenced using nanopore techonology
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