Syntax highlighting for computational biology

This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️

Computational Biology & Bioinformatics Resources

Documentation on St. Jude Cloud.

My notes on programming, mostly using R, Python, and bash.

docker container for running NCI GDC gdc-client

One-stop shop for one-click NGS analyses from the command-line

A simple batch submission script to submit jobs to AutoDock Vina on Linux and MacOS developed by Bhavesh Ashok.

Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis

Large scale, in silico interaction analyses of SARS-CoV-2 nucleocapsid protein variants against human cytokines.

PD-1 Targeted Antibody Discovery Using AI Protein Diffusion

Docker images for the running the HADDOCK system for predicting the structure of biomolecular complexes.

Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.

Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.

Bash, shell scripting functions