Workflow to simulate an RNA-seq reads and perform DE-analysis
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Updated
Apr 29, 2021 - Python
Workflow to simulate an RNA-seq reads and perform DE-analysis
This repository contains an example implementation of DESeq2 in Python.
Iteratively randomly pooling scRNA-seq expressing a given gene from different numbers of cells and running DESeq2 with fdrtools correction to determine how many times which genes come out as enriched with said gene
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
RNA-seq workflow using STAR and DESeq2
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