A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
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Updated
Apr 12, 2024 - Python
A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
Sobolev alignment of deep probabilistic models for comparing single cell profiles
This repository contains code for MFmap (model fidelity map), a semi-supervised generative model integrating gene expression, copy number and mutation data, matching cell lines to cancer subtypes. MFmap compresses high dimensional omics data of cell lines and bulk tumours into subtype informative low dimensional latent representations and predic…
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