Mathematical Modeling of Infectious Disease Dynamics
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Updated
May 16, 2024 - R
Mathematical Modeling of Infectious Disease Dynamics
Unified COVID-19 Dataset
Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."
Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.
COVID-19 Pandemic Data R Package
A framework for data-driven stochastic disease spread simulations
R Package for individual based epidemiological models
Report templates and helper functions for applied epidemiology
An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources
Network Models of HIV Transmission Dynamics among MSM and Heterosexuals
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
R Package for Analyzing John Snow's 1854 Cholera Map
Source code for the EpiEstim app.
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters
An R package for epidemiological analysis using population data
Methods for simulating and analysing the sizes and lengths of chains from branching process models
Public Available Code to Conduct Analyses in "Evaluating the Impact of Long-term Exposure to Fine Particulate Matter on Mortality Among the Elderly."
R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility
R package for epigraphdb
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