An R package to create gene expression atlases from bulk RNA-seq data on NCBI SRA
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Updated
Apr 4, 2023 - R
An R package to create gene expression atlases from bulk RNA-seq data on NCBI SRA
I am going to collect and sort out the data of Asian and White patients who have the Liver Hepatocellular Carcinoma disease, and compare the gene expression between these two kinds of patients.
schematic of gene expression during adult and fetal erythropoiesis
A basic analysis of the gene expressions in the gravier dataset.
An R package to impute miRNA activity using protein-coding gene expression
Code for the preprint "A small fraction of progenitors differentiate into mature adipocytes due to constraints on the cell structure change"
🧽 Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.
Differential Gene Expression (DGE) Analysis in Curated Microarray Data of Breast Cancer Subtypes
DRAB (differential regulation analysis by bootstrapping) is a method for identifying genes with context-specific patterns of local genetic regulation.
Archived version of the zinbwave package. All future development will be done on https://github.com/drisso/zinbwave
Gene Expression analysis with BIG-DE
Analysis of gene expression in umbilical cord blood from ASD, Non-TD, and TD subjects in the MARBLES and EARLI studies
Code for the Adipocyte paper (Curated gene expression dataset of differentiating 3T3-L1 adipocytes under pharmacological and genetic perturbations)
survival of patients using ors on TCGA data
Deconer: A Comprehensive and Systematic Cell Type Deconvolution Evaluator
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
ROSeq - A rank based approach to modeling gene expression with filtered and normalized read count matrix. Takes in the complete filtered and normalized read count matrix, the location of the two sub-populations and the number of cores to be used.
Set of small R scripts helpful in various bioinformatics projects
Gene expression responses of wildlife hosts to pathogen exposure
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