Rare variant test software for next generation sequencing data
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Updated
Jan 26, 2022 - C++
Rare variant test software for next generation sequencing data
Population-scale genotyping using pangenome graphs
A Full Featured Multiple Sequence Alignment Editor.
Fast calculations of linkage-disequilibrium in large-scale human cohorts
Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
Forward-time simulation in Python using fwdpp
TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA features no dependencies to external libraries and combines the robustness of subspace iteration with the power of randomization.
Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
High-level API for storing and querying sequence variant data
Code and Simulations using Bayesian Approximate Kernel Regression (BAKR)
Program for analyzing and manipulating DNA microarray data
A toolbox for C++ devs wanting to build geospatial population genetics simulators !
Kay Prüfer’s FUNC — a package for detecting significant associations between gene sets and ontological annotations
Smart and Accurate Polishing of Phase Haplotypes Integrating Read Enhancements (SAPPHIRE)
A test for distributional differences between cases and controls
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