Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
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Updated
Feb 8, 2024 - R
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
An Efficient Swiss Army Knife for Population Genomic Analyses in R
visual analysis of your VCF files
metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using univariate GWAS summary statistics.
Statistical and computational analysis of the human genome
Handy reusable bioinformatic scripts
An integrated pipeline for analysis and visualization of Population Structure and Relatedness based on genome-wide genetic variant data
Pipeline to identify repetitive elements on non-model species genomes.
mvtests: a suite of functions for testing genetic associations of multiple traits (a.k.a. cross-phenotype associations)
USAT uses a data-adaptive weighted score-based test statistic for testing association of multiple continuous phenotypes with a single genetic marker.
Software supporting M. Cavallaro, et al., 3′-5′ crosstalk contributes to transcriptional bursting. Genome Biol 22, 56 (2021). https://doi.org/10.1186/s13059-020-02227-5
Genome Analysis Toolkit
A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data
Create a Bioconductor/R SDK for Arvados
Analysis of input alphabet sequential data
Optimal AlphaMissense threshold based on VKGL variant classifications
POM-PS tests for genetic associations of secondary traits from case-control GWAS.
alignment visualization and phylogeny plotting for genome aliged regions.
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