An Efficient Swiss Army Knife for Population Genomic Analyses in R
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Updated
May 21, 2024 - R
An Efficient Swiss Army Knife for Population Genomic Analyses in R
Pipeline to identify repetitive elements on non-model species genomes.
alignment visualization and phylogeny plotting for genome aliged regions.
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
Optimal AlphaMissense threshold based on VKGL variant classifications
An integrated pipeline for analysis and visualization of Population Structure and Relatedness based on genome-wide genetic variant data
visual analysis of your VCF files
Handy reusable bioinformatic scripts
mvtests: a suite of functions for testing genetic associations of multiple traits (a.k.a. cross-phenotype associations)
Analysis of input alphabet sequential data
A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data
Statistical and computational analysis of the human genome
Software supporting M. Cavallaro, et al., 3′-5′ crosstalk contributes to transcriptional bursting. Genome Biol 22, 56 (2021). https://doi.org/10.1186/s13059-020-02227-5
metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using univariate GWAS summary statistics.
POM-PS tests for genetic associations of secondary traits from case-control GWAS.
USAT uses a data-adaptive weighted score-based test statistic for testing association of multiple continuous phenotypes with a single genetic marker.
Genome Analysis Toolkit
Create a Bioconductor/R SDK for Arvados
Add a description, image, and links to the genome-analysis topic page so that developers can more easily learn about it.
To associate your repository with the genome-analysis topic, visit your repo's landing page and select "manage topics."