Analysis accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" http://genome.cshlp.org/content/early/2017/03/20/gr.216465.116.full.pdf
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Updated
May 10, 2017 - Java
Analysis accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" http://genome.cshlp.org/content/early/2017/03/20/gr.216465.116.full.pdf
Android application for detection & removal of false overlaps occurred during the genome assembly process
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
Visualize genome sequence assemblies
A reference guided assembler of highly variable viral genomes
Genome assembler de novo that uses De Bruijn graph.
Java standalone app. Parses assembled .fasta and .gff files and display various stats / properties.
This repository contains all the solutions of assignments, starter files and other materials related to this specialization.
MAGset is a tool to analyze and compare MAGs of known species
Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
Reflexiv - a distributed genome assembler using Reflexible Distributed Kmer
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