show the genome structure variation or assembly error by pair-end or mate-pair reads
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Updated
Feb 14, 2019 - Perl
show the genome structure variation or assembly error by pair-end or mate-pair reads
📢🎯 Generic typing tool from amplicons and/or in silico PCR
Elloreas, a genome assembler
A utility to convert chromosome coordinates between different assemblies.
A lecture for basic genome assembly
A pipeline that assembles short reads into full scaffolds and automatically assigns molecular epidemiological and AMR information to the assembled genomes.
🔪⛓️ Repair nanopore assemblies using related genome(s)
A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes
🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
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