MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
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Updated
Jan 10, 2024 - Shell
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
A pipeline for viral identification from metagenomic samples
example genomics workflow for student training
Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
SARS-CoV-2 Genome Assembler
Teaching Material for Course "Computational Bioscience & Machine Learning 2021 - Genome Assembly"
Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming contigs and converting FASTQ to FASTA. Written in Bash. All in one place.
Genomics Part of the KAUST High Throughput Sequencing Workshop 2019
This is a template for all assembly projects. Please read the instructions below on how to use it.
genome assembly snakemake pipeline
Scripts for Hill et al. (2023) doi:10.1093/gbe/evad038 🌿
This repository contains scripts used to process the metagenomic and 16S rRNA gene amplicon data obtained from biological soil crusts in at the Avdat site in the Negev Desert, Israel. The results and discussion of the analysis are published in the manuscript "Distribution of mixotrophy and desiccation survival mechanisms across microbial genomes…
De novo genome assembly of subset of the durian fruit genome.
pacbiohifi sequencing genomes analysis using the verkko, hifiasm and the genomeasm4pg.
Repo containing all scripts associated with huhu nanopore data
Library-free horizontal transfer detection, with a focus on transposable element invasions
genome assembler for cleaning, mapping and assembling genomes.
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