A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
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Updated
May 22, 2024 - Shell
A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
Pipeline to calculate local ancestries using RFMix 1.5 or RFMix 2.0 and Beagle5 or ShapeIT
SpecVar is a convenient tool for estimating interpretable genetic correlation of human complex traits and annotating the SNPs with context specific regulatory networks
GWAS (Genome wide association study) of ARIC study. Implemented with FAST.2.4 package in linux environment.
Code accompanying the manuscript on Genome variation in alpine bumblebees.
Code and variants to generate results published in Waller RG et al, Hum Mol Genet, 2021.
A ToolKit to perform gene-based association studies using VEGAS or MAGMA
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