GENome Organisation Visual Analytics
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Updated
Mar 13, 2024 - R
GENome Organisation Visual Analytics
dcHiC: Differential compartment analysis for Hi-C datasets
Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices
Adjacency-constrained hierarchical clustering of a similarity matrix
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.
Processed data set of Miura et al., Nature Genetics, 2019
An archived version of the InteractionSet repository, see https://github.com/LTLA/InteractionSet for the active version.
An R shiny application for visualization of EndoC-bH1 and human islet genomic data
Code supporting Beitel et al. (2014) regarding strain- and plasmid-level metagenome deconvolution using high-throughput chromosome conformation capture.
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