Benchmarking pipeline published in https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1571-5
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Updated
Sep 14, 2018 - R
Benchmarking pipeline published in https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1571-5
Benchmarking pipeline published in https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1571-5
This repository contains our CellTag CloneHunter R package for clone-calling.
This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
Examples of custom panels for the iSEE package
Binary Factor Analysis: a dimensionality reduction tool for noisy, high throughput single cell genomic data
A tool for unsupervised projection of single cell RNA-seq data
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
K-means clustering for large single-cell datasets
An R package that visualizes Human Cell Atlas annotations on an SVG cell image.
This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
CURRENTLY IN DEVELOPMENT. A package to provide user-friendly access to Human Cell Atlas resources. This package is meant to have similar functionality to the HCA data-explorer https://data.humancellatlas.org/explore/projects.
CITE-seq profiling of human PBMCs at baseline and activation conditions
Clone of the Bioconductor repository for the batchelor package.
Clone of the Bioconductor repository for the BiocSingular package.
Clone of the Bioconductor repository for the scran package.
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