Copy Number Variant Analyzer for Illumina Dragen files. Work in Progress...
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Updated
May 21, 2022 - Python
Copy Number Variant Analyzer for Illumina Dragen files. Work in Progress...
Illumina short read assembly data pipeline for phage
Create fastq symlinks for selected samples in sequencer output directories based on several criteria
RNA-Seq Pipeline for processing paired-end FASTQ transcripts generated from Illumina sequencing. The pipeline trims adapter sequences, aligns transcripts to a specified region of interest on the reference genome, and facilitates downstream analysis.
Group B Strep pipelines for large dataset gene analysis from Illumina sequencing.
LpSIM is a virtual platform for simulating the different stages of the Illumina sequencing library preparation workflow and the possible artefacts that may be introduced at each stage.
Generate a .CSV manifest file for importing multiple samples in the Illumina MiSeq machine
Series of scripts to analyse 454 and Illumina sequences in SSU amplicon against MaarjAM database
Illumina pipeline for 16S sequencing, completed in Python.
A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries
Automated pipeline for amplicon sequence analysis
🚀 A sequencing simulator
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