Microarray Analysis of Differential Expression
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Updated
Apr 7, 2016 - R
Microarray Analysis of Differential Expression
a shiny frontend for the nextflow-bcl pipeline
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
Bioinformatic pipeline for SARS-CoV-2 sequence analysis
A custom bioinformatic workflow for UPDX (Universal Parasite Detection assay) sequences analysis.
Study recombination of the Arabidopsis thaliana radA mutant on cpDNA
TFM_AliciaAranda_Pipeline
TFM_AliciaAranda_QApckg
Pipeline to help design and analyze SPAR-seq experiments
This pipeline is designed for the analysis of DNA methylation data generated from the Illumina HumanMethylation450 BeadChip platform.
Repositorio de pipelines necesarios para analizar secuencias de amplicones illumina con mothur. Se incluyen análisis con asv de bacterias y de hongos (estos últimos poco explicados por Schloss en su SOP).
El genoma pequeño - analysis workflow for "the little genome"
R functions and workflow for submitting amplicon sequence data to the ENA.
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
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