Write SciJava scripts in Jupyter notebook!
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Updated
Aug 21, 2018 - Java
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Write SciJava scripts in Jupyter notebook!
I.P.A.N. consist of a series of ready-to-use Jupyter Notebooks for performing image analysis. It includes a tutorial about the use of PyimageJ and a demonstration of image processing and data acquisition & visualisation.
Notebooks and scripts made by Eduardo Reyes Alvarez (Ph.D.) to aid in the data processing and quantification of projects on Dr. Lois Mulligan's Lab (Queen's University). For better visualization of the content see: