Complete source code and intermediary files to accompany the manuscript published in PLOS Global Public Health.
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Updated
Jul 29, 2022 - C++
Complete source code and intermediary files to accompany the manuscript published in PLOS Global Public Health.
Complete source code and intermediary files to accompany the manuscript published in Nature Medicine.
Fitting a stochastic individual based model for arboviral disease.
Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.
Rcpp package providing an individual-based model to simulate the evolution of movement strategies under risk of pathogen spread.
Source code of the model used in Cornejo-Donoso, J., Einarsson, B., Birnir, B., Gaines, S.D. (2017) Effects of fish movement assumptions on the design of a marine protected area to protect an overfished stock. PlosONE 12(10): e.0186309 https://doi.org/10.1371/journal.pone.0186309
Spatial individual-based model of malaria with a focus on drug resistance evolution.
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