Accurate sample inference from amplicon data with single nucleotide resolution
-
Updated
May 27, 2024 - R
Accurate sample inference from amplicon data with single nucleotide resolution
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)
Shiny application to access metaPR2 database
R functions and workflow for submitting amplicon sequence data to the ENA.
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
Data & Code Supplement for "Environmental DNA as a management tool for tracking artificial waterhole use in savanna ecosystems"
Supplementary files for the paper "Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark"
Public repository of data and analyses from Dirks and Jackson (2020), "Community structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy", Applied and Environmental Microbiology 86 (19)
Shiny app that creates files used by the OBITools to demultiplex metabarcoding sequences
Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."
A primary goal of this research was to characterize vent plume biogeography across a spatial gradient. This study was done in collaboration with OceanX during the 2021 Young Explorers Program.
Scripts for paper Vaulot et al. 2022
Add a description, image, and links to the metabarcoding topic page so that developers can more easily learn about it.
To associate your repository with the metabarcoding topic, visit your repo's landing page and select "manage topics."