prepBioCyc: Preprocess BioCyc files

Serves as the backend code for https://www.curatemetabolicpathways.com

streamlit application for metabolic json from BIGG modelling database.

a slint interface to the BIGG modeler database establishing all the links to the metanextx

scCellFie, inspired by the MATLAB-based CellFie tool, offers advanced analysis of metabolic functions on Python using single-cell and spatial transcriptomics. Efficient and user-friendly, it integrates with Scanpy to extend CellFie's capabilities, enabling in-depth single-cell and spatial metabolic task analysis.

leADS: improved metabolic pathway inference based on active dataset subsampling

Metabolic pathway inference using non-negative matrix factorization with community detection

Web application of metabolics pathway visualisation, for the Gencovery business (https://gencovery.com/), created during the PDP project during the M1 of the Master of Bioinformatics, in Bordeaux.

CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)

julia matlabanalyzer to analyze the BIGG metabolic matrix

MNXref: Reconciliation of metabolites and biochemical reactions for metabolic networks

reMap: relabeling metabolic pathway data with groups to improve prediction outcomes

A basic network of human metabolism, including key enzymes, intermediates, and hormonal influences

PathVisio plugin to find relevant metabolic reactions from Rhea

Pipeline plugins for PALADIN, providing HPC support, abundance (taxonomy, go terms), customized reports, etc

Library to perform metabolic engineering tasks

Diversity-based enumeration of optimal context-specific metabolic networks

Identifying reprogrammed metabolic routes given omics data.

Ⓜ️ Metabolic network completion