Pinned repositories

  1. meneco

    metabolic network completion

    Jupyter Notebook 6 2

  2. caspo

    Reasoning on the response of logical signaling networks with Answer Set Programming

    Python 5 2

  3. ingranalyze

    Influence graph analysis, consistency check, diagnosis, repair and prediction

    Python 2

  4. exdesi

    Design experiments to differentiate interaction graph models

    TeX 1

  5. iggy

    Influence graph analysis, consistency check, diagnosis, repair and prediction

    Python 2 2

  6. precursor

    Compute minimal metabolic precursors sets that enable the production of target metabolites

    Python 1

  • Website for the BioASP software collection

    CSS Updated May 23, 2018
  • Boolean network inference from time series data with perturbations

    Python 2 Updated Mar 29, 2018
  • Design experiments to differentiate interaction graph models

    TeX 1 GPL-3.0 Updated Mar 29, 2018
  • Reasoning on the response of logical signaling networks with Answer Set Programming

    Python 5 2 GPL-3.0 Updated Oct 20, 2017
  • metabolic network completion

    Jupyter Notebook 6 2 GPL-3.0 Updated Aug 30, 2017
  • Influence graph analysis, consistency check, diagnosis, repair and prediction

    Python 2 2 GPL-3.0 Updated Aug 30, 2017
  • Influence graph analysis, consistency check, diagnosis, repair and prediction

    Python 2 GPL-3.0 Updated Mar 9, 2016
  • Finding shortest genome segments that regulate metabolic pathways

    Python 1 GPL-3.0 Updated Dec 10, 2015
  • Compute minimal metabolic precursors sets that enable the production of target metabolites

    Python 1 GPL-3.0 Updated Dec 9, 2015
  • a simple gui for meneco

    Python 1 GPL-3.0 Updated Dec 9, 2015
  • meneco++

    Python Updated Oct 8, 2015
  • BioASP software collection

    Python 1 GPL-3.0 Updated Jun 2, 2014