Code supporting Beitel et al. (2014) regarding strain- and plasmid-level metagenome deconvolution using high-throughput chromosome conformation capture.
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Updated
May 29, 2016 - R
Code supporting Beitel et al. (2014) regarding strain- and plasmid-level metagenome deconvolution using high-throughput chromosome conformation capture.
Import and process results from a metagenomics output e.g. metaphlan2
Statistical and Computational methods for Microbiome Studies.
Interactive application to explore various ecological diversity metrics
code to reproduce AIH results
Toolkit for comparative metagenomics in EDGE
Interactive tools for metagenome visualization and binning in R
Repository associated with Jenior ML, et al. (2018). mSphere.
R shiny app to analyze metagenomic data from the Baltic Sea and predict environmental parameters from own data via a random forest model.
behavior of an internal control in metagenomic sequencing
microbialites stromatolites metagenomes metagenomics denovo-assembly
Structured Queries and analyses used with MetamapsDB
Analysis for McLaren, Willis, and Callahan (2019)
Helper function for comparative genomics and metagenomics
METAgenomic LONgitudinal Differential Abundance method
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
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