Jupyter Notebook showing how to plot FES, histograms and time-series data using Matplotlib.
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Updated
Dec 21, 2020 - Jupyter Notebook
Molecular dynamics allows the atoms and molecules to interact for a fixed period of time, giving a view of the dynamic "evolution" of the system.
Jupyter Notebook showing how to plot FES, histograms and time-series data using Matplotlib.
Molecular Dynamics Simulation using GROMACS in Jupyter notebook
Code and example notebook demostrating usage of Tangent Space Least Adaptive Clustering algorithm for molecular dynamics simulations with known collective variables