CMU-SAFARI / RawHash Star 43 Code Issues Pull requests RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440). bioinformatics nanopore seeding segmentation event-detection genome-analysis hash-tables contamination read-mapping relative-abundances nanopore-sequencing nanopore-analysis-pipeline nanopore-reads nanopore-data nanopore-minion raw-signal rawhash raw-nanopore-signal-analysis Updated Sep 10, 2024 C
Xinglab / TideHunter Star 19 Code Issues Pull requests TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain tandem-repeats long-reads multiple-sequence-alignment nanopore-sequencing seed-and-chain partial-order-alignment Updated Jun 17, 2024 C
stuckinaboot / iGenomics Star 37 Code Issues Pull requests The first app for Mobile DNA Sequence Alignment and Analysis ios dropbox genomes dna-sequencing nanopore-sequencing obj-c Updated Mar 23, 2021 C
hitbc / TideHunter Star 1 Code Issues Pull requests TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain tandem-repeats long-reads multiple-sequence-alignment nanopore-sequencing partial-order-alignment Updated Oct 21, 2020 C
liyu95 / DeepSimulator Star 115 Code Issues Pull requests The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing. deep-learning nanopore-sequencing nanopore-simulator Updated Oct 20, 2020 C