Use Jaccard index and constituent genes to identify groups of similar pathways
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Updated
Dec 12, 2022 - R
Use Jaccard index and constituent genes to identify groups of similar pathways
Investigating the use of hierarchical modelling for pathway analyses
This repository contains the code for the project: Transcriptomic meta-analysis reveals up-regulation of gene expression functional in osteoclast differentiation in human septic shock
Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings
Survival based clustering of gene expression data for disease subtyping
Population-based pathway analysis of SNP-SNP coevolution
A knowledge-based T2-statistic to perform pathway analysis for quantitative proteomic data.
Pathway enrichment analysis / visualize for Single Cell Data
An R package for multi-dimensional pathway enrichment analysis (legacy repo)
Analyze and compare different pathway resources
Survival Analysis through the integration of expression data, phenotype data, and clinical data
Nextflow pipeline for microarray and RNA-seq
Survival Analysis through the integration of expression data, phenotype data, and clinical data
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
Package to calculate functional similarity between genes https://biocor.llrs.dev
PAVER: Pathway Analysis Visualization with Embedding Representations
Flexible gene set enrichment analysis
GRAPH Interaction from pathway Topological Environment
An R package for multi-dimensional pathway enrichment analysis
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