Hedgehog genomic project using RAD paired-end reads
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Updated
Aug 16, 2016 - Python
Hedgehog genomic project using RAD paired-end reads
workflow for reproducing results of a nature paper
Workflow for calling variants using data from 3000 Rice Genomes project
The LaTeX source for my PhD Thesis, the viva for which took place in September, 2016.
Estimates polymorphism and divergence parameters from FASTA alignments
Multivariate vIsualisatioN and OuTlier Analysis Using R
Null models, performance testing, and power estimation with population simulations
Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
A Javascript chart for Linkage Disequilibrium (based on three.js)
starmie: plotting and inference for population structure models 🌟
G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.
R scripts that use Shiny to render interactive popgen plots
Folders contaning scripts and other required data files for particualr PopGen tasks
Custom scripts for creating plots in Circos
Guides I wrote for labmates
A modification to Sikora's admixr to make it more accesible
software implementation of the hidden Markov model developed in Kern and Haussler (2010)
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