R client for the OmniPath web service
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Updated
Jun 13, 2024 - R
R client for the OmniPath web service
Cancer-dedicated gene set interpretation
The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
Interactive Shiny application for tidyproteomics
Plots from papers by Jeffrey M. Dick
Bioconductor R package for BridgeDb
NCutYX is an R package for clustering different types of genomic data.
Chemical analysis of proteins
Additional utilities for [STRINGdb](https://www.bioconductor.org/packages/release/bioc/html/STRINGdb.html).
Prediction of the atomic composition based on a single accurate mass -- R
A light-weight FASTA reader and parser
MIT UROP Fall 2018, IAP 2019, Spring 2019. Predicting Intracellular protein localization from homopolymeric amino acid tracts.
An Rpackage to identify cells membrane marker genes from bulkRNA sequencing data
The aim of this project is to correctly predict the contact types in given protein structures, which are to be presented in PDB file format. MODELS: Naive Bayes Classifier, Multinomial Logistic Regression, Linear Discriminant analysis.
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