Quantification and statistical analysis of quantitative proteomics experiments.
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Updated
May 24, 2017 - C#
Quantification and statistical analysis of quantitative proteomics experiments.
Data converter from a tab-separated text file to a QuiXML file to be used in QuiXoT.
A software for importing spectral data from Thermo RAW files to binStack format usable by QuiXoT.
A lightweight multi-purpose program to operate with XML files. Designed especially to manage large QuiXML files.
Proteomics development kit focused on top-down analysis
A SEQUEST protein identification validator program created to calculate the probability of random peptide matching and the FDR when a large collection of MS2 spectra is searched against a database using SEQUEST.
A GUI to view the annotated spectra identified by ECL2
A software part of the QuiXoT software package used to analyse protein quantifications performed in the MS1-spectra (such as 18O/16O or SILAC).
QCactus is a C# desktop application for quickly consolidating QC metrics for proteomics data.
Software used in combination with MascotToQuiXML to import spectral data from Mascot's MGF files to be used in QuiXoT by converting them into binStack binary files.
Tool to automatically upload result file to Proteomics Data Manager (mainly for MS based proteomics)
a novel algorithm for label-free absolute protein quantification
Enables working with external scripts and tools from within Perseus
Complementary Finder and MSn deconvolution processing nodes for Thermo Proteome Discoverer 2.x.
Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
Software solution for common top-down proteomics tasks
Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
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