regulatory-genomics
Here are 20 public repositories matching this topic...
A Hugo-based deployment of biocomputeobject.org
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Sep 10, 2021 - HTML
A set of tutorials for how to use all the tools in ML4GLand
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Sep 20, 2023 - Jupyter Notebook
Analyze the active regulatory region of DNA using FFNN and CNN
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Mar 29, 2021 - Python
Repository documenting applications of the ML4GLand suite on published datasets
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Jan 3, 2024 - Jupyter Notebook
Motif representation and analysis toolkit in Python
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Jul 21, 2023 - Jupyter Notebook
Prediction of transcription factor binding based on DNA sequence
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Jan 6, 2021 - Jupyter Notebook
Deep learning model for non-coding regulatory variants
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Sep 22, 2023 - Python
Deep Unfolded Convolutional Dictionary Learning for motif discovery.
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Feb 2, 2023 - Julia
A curated list of regulatory genomics papers and resources.
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Apr 3, 2023
Datasets for benchmarking, testing and developing in EUGENe
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Dec 11, 2023 - Python
squid repository for manuscript analysis
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Mar 5, 2024 - Python
Interpreting sequence-to-function machine learning models
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Jan 25, 2024 - Jupyter Notebook
Threshold and p-value computations for Position Weight Matrices
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Dec 15, 2021 - Julia
lsgkm+gkmexplain with regression functionality. Builds off kundajelab/lsgkm (which has gkmexplain), which in turn builds off Dongwon-Lee/lsgkm (the original lsgkm repo)
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Dec 1, 2020 - C
Genomic sequence preprocessing toolkit
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Apr 26, 2024 - Python
surrogate quantitative interpretability for deepnets
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Apr 24, 2024 - Python
Data-driven design of context-specific regulatory elements
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Nov 30, 2021 - PostScript
Elucidating the Utility of Genomic Elements with Neural Nets
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Apr 16, 2024 - Jupyter Notebook
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
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May 20, 2024 - Jupyter Notebook
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