A easy configured and deployed pipeline for joint analysis with RNA-seq and ChIP-seq.
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Updated
Jun 27, 2023 - R
A easy configured and deployed pipeline for joint analysis with RNA-seq and ChIP-seq.
RNA-seq workflow: gene-level exploratory analysis and differential expression.
R scripts for human and marine data analysis
TCM: visualizes trajectories and cell populations from single cell data
A set of functions built for analysis and visualization (color blindness friendly) of single-cell and bulk RNA-sequencing data
Example of how to apply machine learning (ML) approaches in building a predictive model. RNA-seq data set used to train and evaluate the performance of different ML models.
Quantification and Visualization of Variations of Splicing in Population
Cross-species RNA-Seq differential expression comparison with 2D pathway enrichment—rank-based MONOVA test.
Basic script for RNA-seq analysis with DESeq2
Data and code used in the Plant Genomes dashboard
Wrapper Script for Harmony designed to work with GenePattern Module Integrator
RNA-seq analysis for zebrafish with muscle injury
Scripts used in "Patterns of Differential Gene Expression in a Cellular Model of Human Islet Development, and Relationship to Type 2 Diabetes Predisposition"
Data package for Drosophila melanogaster RNA-seq
Identify Differential Expressed Genes in DgcA null mutant and Knock-out samples in Dictyostelium discoideum. The same workflow has been used for the differential expression analysis of Polysphondylium pallidum.
scrape REVIGO Gene Ontology web app and plot results
MUREN: a Robust and Multi-reference Approach of RNA-seq Transcript Normalization
Introductory RNA-seq course for LCG-UNAM Feb 2023 (in Spanish)
Code, data, and figures for an experimental pathogen exposure study using wood frogs and American bullfrogs
Analysis scripts for the manuscript: "Spatial transcriptomics unveils ZBTB11 as a regulator of cardiomyocyte degeneration in arrhythmogenic cardiomyopathy".
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