Scripts accompanying manuscript "The genomic basis of reproductive and migratory behaviour in a polymorphic salmonid"
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Updated
Sep 20, 2022 - R
Scripts accompanying manuscript "The genomic basis of reproductive and migratory behaviour in a polymorphic salmonid"
Bioc2022 workshop. SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish
Code, data, and figures for an experimental pathogen exposure study using wood frogs and American bullfrogs
Some information about whether the log-normal correction should be used in escapement goal analysis.
R package for VRAP rewrite
Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.
Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.
This is an R package that runs the standardized trends metrics used in the 5-year Viability Reports for listed PNW salmonids.
Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD
Code and scripts for the RNA-seq analysis of project: SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity
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