Microsatellite genotyping
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Updated
Nov 16, 2021 - Python
Microsatellite genotyping
🧬 A curated list of awesome resources for repeat DNA research
Detection and classfication of short tandem repeats in read data
🧬 recombination and mutation rates inference from polymorphisms (STRs, SNPs and INDELs) along the X chromosome
Allele-specific expression (ASE) for short tandem repeats (STRs)
Supporting code for the microsatellite genotyping paper introducing CHIIMP
A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
Computational, High-throughput Individual Identification through Microsatellite Profiling
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.
Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
Detect novel (and reference) STR expansions from short-read data
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