Bash scripts for running QIIME 1.9 and a Snakemake workflow to automate it using singularity container images.
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Updated
Jun 20, 2023 - Shell
Bash scripts for running QIIME 1.9 and a Snakemake workflow to automate it using singularity container images.
Automatically build Apptainer images for APSIM
Install Singularity to your Debian/Ubuntu system
A short tutorial on building an Apptainer image for fast.ai course/book
Cloud computing How-To
Singularity-based linux container with CellProfiler 4 pre-installed into it.
Singularity containerization of a Conda-based multi-environment bash script.
A collection of singularity recipies for bioinformatic pipelines.
BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)
bcftools singularity container
VEP environments containerized for singularity
bedtools environment containerized for singularity
Some HPC Singularity containers
Singularity builder to build, install, and update Singularity software on different platforms
singularity image for graspit with python 3
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