Container Environment Modules for SJTU PI
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Updated
Mar 1, 2021 - Lua
Container Environment Modules for SJTU PI
FLAC (/flæk/; Free Lossless Audio Codec) is an audio coding format for lossless compression of digital audio.
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data
cutadapt removes adapter sequences from sequencing reads.
bcftools — utilities for variant calling and manipulating VCFs and BCFs.
C++ API & command-line toolkit for working with BAM data
METHYLPY, is an analysis pipeline for DNA methylation data.
FLASH (Fast Length Adjustment of SHort reads) is a very fast and accurate software tool to merge paired-end reads from next-generation sequencing experiments.
BUSCO is a tool to assess completeness of genome assembly, gene set, and transcriptome.
RAxML - Randomized Axelerated Maximum Likelihood.
The jp command is a command line interface to JMESPath, an expression language for manipulating JSON.
bowtie2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.
BSMAP is a short reads mapping software for bisulfite sequencing reads.
A terminal based graphical activity monitor inspired by gtop and vtop
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