Source files for my PhD thesis "Brain functional connectivity and its aberrations in mouse models of autism"
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Updated
Dec 17, 2017 - TeX
Source files for my PhD thesis "Brain functional connectivity and its aberrations in mouse models of autism"
Python tool for spatially normalizing diffusion MRI data
We provide a method to extract the tractographic features from structural MR images for patients with brain tumor
Docker container for FiberNavigator for Brainlife.io
Connectivity-based parcellation
OG 2019 - Project 04: Novel neuronavigation to guide brain stimulation
LiFE-GPU-opt software is an optimized implementation of the compute-intensive matrix operations of the LiFE algorithm for GPUs.
This repository extracts the tractograpic feature, other first-order features and the state-of-the-art feature from the stroke lesion. A random forest regressor is used with one type of feature to predict the modified Rankin Scale of stroke patients.
Tract Segmentation from input tractography using ROIs
A toolkit for developing reinforcement algorithm for diffusion weighted image analysis.
Automatic Tractography Tool
Bend, twist, spread... TrackerYoga is a set of synthetic diffusion MRI data for testing tractography algorithms.
This is a set of tools associated with automatically segmenting tractography datasets using a combination of two complementary approaches: streamlines included in a fascicle model are identified based on 1) anatomical connectivity priors based on Freesurfer-derived regions of interest (ROIs) in the subject’s native space and 2) shape priors base…
Scripts for MRI preprocessing
MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
Brainlife wrapper app for dipy_track workflows.
Brainlife wrapper app for dipy_track_pft workflows.
Quick and dirty way of performing Sholl analysis after tractography
Method for encoding brain connectomes in multidimensional arrays (tensors).
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