Build SQLite tables of microRNAs and Transcription Factors-gene Correlations
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Updated
Nov 17, 2017 - R
Build SQLite tables of microRNAs and Transcription Factors-gene Correlations
Read HOMER motif analysis output in R.
🐛 How to use CENTIPEDE to determine if a transcription factor is bound.
ATAC-Seq Transcription Factor Footprint Discovery and Analysis
Code and resources related to the olfactory regeneration project
CMTCN: A web tool for investigating cancer-specific microRNA and transcription factor co-regulatory networks
Build the database file for cRegulome package
🎯 Human transcription factor target genes from 6 databases in convenient R format.
Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
Code for the PeerJ paper (cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer)
Scripts for reproducing the poster: Co-regulation of RKIP and autophagy genes by VEZF1 and ERCC6 in prostate cancer
An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer
geneXtendeR analysis on 547 ENCODE ChIP-seq datasets for both proximal and distal transcription factor (TF) binding peaks for all cell types
An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer
Code for the BMC Genomics paper (Integrating binding and expression data to predict transcription factors combined function)
A research compendium: Transcriptional regulation of autophagy during adipocyte differentiation
Code for the Cells paper (Transcriptional Regulation of Autophagy Genes via Stage-Specific Activation of CEBPB and PPARG during Adipogenesis)
Ligand-Receptor Interaction map based on scRNA-seq and pathway enrichment
A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
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