GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
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Updated
May 10, 2024 - R
GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
Annotation helper tool for the manual curation of transposable element consensus sequences
Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
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