Several variant analysis workflows for different types of sequencing data

Simulation of COVID-19 cases arising from high-risk contacts

Automatic annotation generation of the Variants in the VCF file into a text file

ShinyApp repo for the CovidTracker, any details further than the codes here available please send an email to rafael.lopes at yale.edu

An R package for interacting with the CIViC API

Components of a workshop on variant annotation using OpenCRAVAT with Bioconductor

Repository with codes to the paper 'Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the United States'

A/B testing (or split-testing) is a randomized experiment with two variants A and B. It includes application of statistical hypothesis testing (or two-sample hypothesis testing), as used in the field of statistics. A/B testing is a way to compare two versions of a single variable, typically by testing a subject's response to variant A against va…

El genoma pequeño - analysis workflow for "the little genome"

Bundle of Useful scRNA-seq Gating Tools Extending seuRat

acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change counts, lengths, and presence/absence at CpG sites; and characteristics of parental age and number of DNVs.

visualization for MaveDB

visual analysis of your VCF files

Multi-sample somatic variant caller