onsite_stomata_platform

jupyter notebook based gui platform to control jetson nano connected camera through client browser.

Data included in this repository

• SSD model (tensorflow saved_model format) trained to detect wheat stomata of imprint images
  • ./saved_model
• Manual to prepare and train a tensorflow stomata detector model in colab.
  • StomataDetectorModelTrainingManual.ipynb
  • Open in Google Colaboratory
• Example codes to execute a GUI in jupyter notebook or jupyterlab.
  • main_En.ipynb

Data not included in this repository

please download the zip file from the following link (abt.422Mb) for using it in StomataDetectorModelTrainingManual.ipynb

https://drive.google.com/file/d/1bm9f3KW185V0U0W8-9R3-6fp0mURsBHK/view?usp=sharing

Datasets used for model training and for reproducibility

• imprint.zip
  • trainval folder: Training/Val dataset images (jpg)
  • trainval_coco.json: Training/Val dataset annotation in COCO json format
  • test folder: Test dataset images (jpg)
  • test_labelbox.json: Test dataset annotation in Labelbox json format

Requirements

• jupyter notebook
• tensorflow 2.x
• OpenCv 3.x
• other basic compoenets such as numpy etc

Screenshots

Instruction

see main_En.ipynb for details

License

MIT License

Copyright (c) 2020 yosuke toda

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Citation

If you use this code or incorporate into your program and publish a paper, please cite the following paper.

To be Defined