ngsQC

ngsQC is a collection of programs for quality control of next-generation sequencing data.

snpCleaner is a perl script that filters VCF format files.
vcfCleaner is a collection of C++ programs for quality-filtering and subsetting VCF files, as well as file format conversion.
readCleaner is a C++ program for fastq quality-control.

Installation

Download ngsQC by either cloning it from github

git clone https://github.com/tplinderoth/ngsQC.git

or download the ZIP file.

Name		Name	Last commit message	Last commit date
Latest commit History 90 Commits
bamstats		bamstats
readCleaner		readCleaner
snpCleaner		snpCleaner
vcfCleaner		vcfCleaner
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md