IMPLICITLY MERGED: Fix ATDM Trilinos builds broken by TriBITS update (#10774) #10791

bartlettroscoe · 2022-07-21T22:06:50Z

Internal issues

Description

This PR contains updates to TriBITS and Trilinos to address failures in the ATDM Trilinos builds described in #10774. As I fix these builds and update this topic-branch, I will manually merge this topic branch to the 'atdm-nightly-manual-updates' branch so this gets run in the ATDM Trilinos builds. This way, we can see how this works in the ATDM Trilinos builds without getting help up by issues with PR testing (e.g. #10782). (See the motivation and description for this workflow in Restoring productivity through the advanced usage of Git.)

Issues addressed in the PR:

Link errors due to improper order of CGNS and HDF5 libraries on link line described in Address failures from merge of updated TriBITS (#10614, TriBITSPub/TriBITS#299) #10774 (comment) (pulls in Fix abs path issue with TPL dependencies, add CGNS/HDF5 dep (#299, trilinos/Trilinos#10744) TriBITSPub/TriBITS#502)
CUDA build failures due to duplicate CUDA library function definitions when creating libIntercept.so.13.5 described in Address failures from merge of updated TriBITS (#10614, TriBITSPub/TriBITS#299) #10774 (comment) (pulls in Fix FindTPLCUDA.cmake (#299) TriBITSPub/TriBITS#503)
Fix Link errors missing __dlopen for 'ats1' builds (pulls in Change type to IMPORTED STATIC for *.a file (trilinos/Trilinos#10774) TriBITSPub/TriBITS#504)

NOTE: I also removed Krino from the set of disabled packages since the ATDM customers are not using it and is failing (see #10524).

NOTE: This also pulls in TriBITS changes for the PRs:

Testing

All of the new ATDM Trilinos build errors triggered by triggered by the merge of #10614 have been resolved as of 2022-07-26. See below.

The ATDM customers don't need Krino and it has been failing the build for all recorded time on CDash since the package was first added (see trilinos#10524).

Origin repo remote tracking branch: 'github/master' Origin repo remote repo URL: 'github = git@github.com:TriBITSPub/TriBITS.git' Git describe: Vera4.0-RC1-start-1219-g8b3872ed At commit: commit 4b26997a2b19c29cbc6deaba5ad303b2336b63e6 Author: Roscoe A. Bartlett <rabartl@sandia.gov> Date: Thu Jul 21 10:35:22 2022 -0600 Summary: Add dependency of CGNS on HDF5 (trilinos#10774)

…ilinos#10774) Brings in PR TriBITSPub/TriBITS#502

…#10744, #10791) Merge the current status of the topic branch in PR #10791 so we can get this into ATDM Trilinos nightly testing.

Origin repo remote tracking branch: 'github/master' Origin repo remote repo URL: 'github = git@github.com:TriBITSPub/TriBITS.git' Git describe: Vera4.0-RC1-start-1221-g0d1da434 At commit: commit 6d15ef8ea26694f154f89efe3a609a2a4a7e7f30 Author: Roscoe A. Bartlett <rabartl@sandia.gov> Date: Thu Jul 21 20:55:22 2022 -0600 Summary: Fix FindTPLCUDA.cmake (trilinos#299)

…ilinos#10774)

bartlettroscoe · 2022-07-22T03:30:21Z

FYI: With the merge commit bd772e6, we should see the CUDA link errors described above fixed in the ATDM Trilinos builds tomorrow. (I had to manually merge directly to the 'atdm-nightly' branch because the auto-update completed about 25 minutes ago but none of the ATDM Trilinos builds should have fired off yet so we should still get a consistent set of ATDM Trilinos builds tomorrow.)

The details on how I did a reference build and reproduced the link errors and how I explained the link lines to find the problem are given below.

Reproducing and examining the build errors for the build 'cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt': (click to expand)

Now to try to reproduce the CUDA link errors. But first, I want to do a reference build so I can compare. The CUDA multiple defined errors described in #10774 (comment) occur in the creation of the shared lib libIntercept.so.13.5 which looks to be created at:

$ find packages/tpetra/ -type f -exec grep -B 5 -A 5 -nHi Intercept {} \;
...
packages/tpetra/core/test/KokkosIntegration/CMakeLists.txt-7-  TRIBITS_ADD_LIBRARY(
packages/tpetra/core/test/KokkosIntegration/CMakeLists.txt:8:    Intercept
packages/tpetra/core/test/KokkosIntegration/CMakeLists.txt:9:    SOURCES Intercept.cpp
packages/tpetra/core/test/KokkosIntegration/CMakeLists.txt-10-    SHARED
packages/tpetra/core/test/KokkosIntegration/CMakeLists.txt-11-    TESTONLY
packages/tpetra/core/test/KokkosIntegration/CMakeLists.txt-12-  )
...

So I should just have to build Tpetra to figure this out. Also, this is a TESTONLY lib so it can't (directly) impact installed versions of Trilinos.

Let's do the reference build on the branch '10774-pre-tribits-update-ref' at version:

$ ssh ascicgpu17

$ cd /fgs/rabartl/Trilinos.base.ref/Trilinos/

$ gitdist-status --dist-repos=.
-------------------------------------------------------------------------------------------------------------
| ID | Repo Dir        | Branch                       | Tracking Branch                         | C | M | ? |
|----|-----------------|------------------------------|-----------------------------------------|---|---|---|
|  0 | Trilinos (Base) | 10774-pre-tribits-update-ref | rab-github/10774-pre-tribits-update-ref |   |   |   |
-------------------------------------------------------------------------------------------------------------

$ gitdist-repo-versions --dist-repos=.
*** Base Git Repo: Trilinos
bdcac66d1be2b31476d549dcd3420a3ac5cbdcd6 [Sun Jul 17 07:19:08 2022 -0600] <trilinos@sandia.gov>
Merge Pull Request #10736 from iyamazaki/Trilinos/FastILU-metis

and we do the reference build on 'ascicgpu17' with:

$ ssh ascicgpu17

$ cd /fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/

$ cat checkin-test-atdm-cee-rhel7.sh
env ATDM_CHT_DEFAULT_ENV=cee-rhel7-default \
/fgs/rabartl/Trilinos.base.ref/Trilinos/cmake/std/atdm/checkin-test-atdm.sh \
"$@"

$ ./checkin-test-atdm-cee-rhel7.sh \
  cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt \
  --enable-packages=Tpetra --local-do-all

PASSED (NOT READY TO PUSH): Trilinos: ascicgpu17

Thu Jul 21 18:57:39 MDT 2022

Enabled Packages: Tpetra

Build test results:
-------------------
0) MPI_RELEASE_DEBUG_SHARED_PT_OPENMP => Test case MPI_RELEASE_DEBUG_SHARED_PT_OPENMP was not run! => Does not affect push readiness! (-1.00 min)
1) cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt => passed: passed=283,notpassed=0 (23.25 min)

Now, reproducing the updated TriBITS build error on the branch '10774-fix-atdm-builds' at the repo state:

$ ssh ascicgpu17

$ cd /fgs/rabartl/Trilinos.base/Trilinos/

$ gitdist-status --dist-repos=.
-----------------------------------------------------------------------------------------------
| ID | Repo Dir        | Branch                | Tracking Branch                  | C | M | ? |
|----|-----------------|-----------------------|----------------------------------|---|---|---|
|  0 | Trilinos (Base) | 10774-fix-atdm-builds | rab-github/10774-fix-atdm-builds |   |   |   |
-----------------------------------------------------------------------------------------------

$ gitdist-repo-versions --dist-repos=.
*** Base Git Repo: Trilinos
c651bffa4b042f4b6037a2da385166de9313d9e1 [Thu Jul 21 15:33:40 2022 -0600] <rabartl@sandia.gov>
Merge branch 'tribits_github_snapshot' into 10774-fix-atdm-builds (#10774)

reproducing the updated TriBITS build error with:

$ ssh ascicgpu17

$ cd /fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/

$ ./checkin-test-atdm-cee-rhel7.sh \
  cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt \
  --enable-packages=Tpetra --local-do-all

FAILED (NOT READY TO PUSH): Trilinos: ascicgpu17

Thu Jul 21 18:57:42 MDT 2022

Enabled Packages: Tpetra

Build test results:
-------------------
0) MPI_RELEASE_DEBUG_SHARED_PT_OPENMP => Test case MPI_RELEASE_DEBUG_SHARED_PT_OPENMP was not run! => Does not affect push readiness! (-1.00 min)
1) cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt => FAILED: build failed => Not ready to push! (16.88 min)

and it showed the build error:

/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy2DFromArray':
(.text+0x2c300): multiple definition of `cudaMemcpy2DFromArray'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x830): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy3D':
(.text+0x2bc20): multiple definition of `cudaMemcpy3D'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0xcd0): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy2DArrayToArray':
(.text+0x2bdc0): multiple definition of `cudaMemcpy2DArrayToArray'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x700): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpyAsync':
(.text+0x45ad0): multiple definition of `cudaMemcpyAsync'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x480): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy2D':
(.text+0x2cc60): multiple definition of `cudaMemcpy2D'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x620): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy3DPeer':
(.text+0x2ba80): multiple definition of `cudaMemcpy3DPeer'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0xd70): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpyToSymbol':
(.text+0x2d0d0): multiple definition of `cudaMemcpyToSymbol'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x1320): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy3DAsync':
(.text+0x44760): multiple definition of `cudaMemcpy3DAsync'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x3a0): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy3DPeerAsync':
(.text+0x44590): multiple definition of `cudaMemcpy3DPeerAsync'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0xe40): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpyPeer':
(.text+0x36a40): multiple definition of `cudaMemcpyPeer'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x1130): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaDeviceSynchronize':
(.text+0x2b0b0): multiple definition of `cudaDeviceSynchronize'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x1c0): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpyFromSymbolAsync':
(.text+0x45650): multiple definition of `cudaMemcpyFromSymbolAsync'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x1020): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpyFromSymbol':
(.text+0x2cec0): multiple definition of `cudaMemcpyFromSymbol'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0xf20): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy2DAsync':
(.text+0x453b0): multiple definition of `cudaMemcpy2DAsync'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x290): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy2DFromArrayAsync':
(.text+0x44930): multiple definition of `cudaMemcpy2DFromArrayAsync'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x950): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy':
(.text+0x2d2e0): multiple definition of `cudaMemcpy'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x560): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy2DToArrayAsync':
(.text+0x44e70): multiple definition of `cudaMemcpy2DToArrayAsync'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0xba0): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpy2DToArray':
(.text+0x2c7b0): multiple definition of `cudaMemcpy2DToArray'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0xa80): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpyToSymbolAsync':
(.text+0x45890): multiple definition of `cudaMemcpyToSymbolAsync'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x1420): first defined here
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/bin/..//lib64/libcudart_static.a(libcudart_static.a.o): In function `cudaMemcpyPeerAsync':
(.text+0x47d90): multiple definition of `cudaMemcpyPeerAsync'
CMakeFiles/Intercept.dir/Intercept.cpp.o:tmpxft_00004594_00000000-5_Intercept.cudafe1.cpp:(.text+0x1210): first defined here
collect2: error: ld returned 1 exit status
make[2]: *** [packages/tpetra/core/test/KokkosIntegration/libIntercept.so.13.5] Error 1
make[1]: *** [packages/tpetra/core/test/KokkosIntegration/CMakeFiles/Intercept.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....

Now, let's get the link line for the reference build:

$ cd /fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/

$ . load-env.sh

$ cd packages/tpetra/core/test/KokkosIntegration/

$ rm libIntercept.so.13.5

$ make VERBOSE=1

which produced the reference build link command:

cd /fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/core/test/KokkosIntegration && /projects/sparc/tools/cmake/3.23.2/x86_64/bin/cmake -E cmake_link_script CMakeFiles/Intercept.dir/link.txt --verbose=1
/projects/sierra/linux_rh7/SDK/mpi/openmpi/4.0.3-nvidia-10.1.243-RHEL7/bin/mpicxx -fPIC      -expt-extended-lambda -arch=sm_70  -O3 -DNDEBUG -shared -Wl,-soname,libIntercept.so.13 -o libIntercept.so.13.5 CMakeFiles/Intercept.dir/Intercept.cpp.o   -L/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64  -Wl,-rpath,/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/tsqr/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/epetra/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos-kernels/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/remainder/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/kokkoscomm/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/kokkoscompat/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/numerics/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/algorithms/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/containers/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/comm/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/parameterlist/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/parser/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/core/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/core/src:/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64:/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64 ../../../tsqr/src/libkokkostsqr.so.13.5 ../../../../epetra/src/libepetra.so.13.5 ../../../../kokkos-kernels/src/libkokkoskernels.so.13.5 ../../../../teuchos/remainder/src/libteuchosremainder.so.13.5 ../../../../teuchos/kokkoscomm/src/libteuchoskokkoscomm.so.13.5 ../../../../teuchos/kokkoscompat/src/libteuchoskokkoscompat.so.13.5 ../../../../teuchos/numerics/src/libteuchosnumerics.so.13.5 ../../../../kokkos/algorithms/src/libkokkosalgorithms.so.13.5 ../../../../kokkos/containers/src/libkokkoscontainers.so.13.5 /projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcudart.so /projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcublas.so /projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcufft.so /projects/sparc/tpls/cee-v100/parmetis-4.0.3/bbc4da521d670fd9137b3c1e6917090ae52f91af/cee-v100_cuda-10.1.243_gcc-7.2.0_openmpi-4.0.3/lib/libmetis.a /projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcusparse.so /projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcusolver.so ../../../../teuchos/comm/src/libteuchoscomm.so.13.5 ../../../../teuchos/parameterlist/src/libteuchosparameterlist.so.13.5 ../../../../teuchos/parser/src/libteuchosparser.so.13.5 ../../../../teuchos/core/src/libteuchoscore.so.13.5 ../../../../kokkos/core/src/libkokkoscore.so.13.5 -ldl /projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcudart.so /projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcublas.so /projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcufft.so -lbfd /usr/lib64/libiberty.a -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core /projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64/libiomp5.so -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core /projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64/libiomp5.so

Comparing that to the updated TriBITS build link line:

$ cd /fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/

$ . load-env.sh

$ cd packages/tpetra/core/test/KokkosIntegration/

$ make VERBOSE=1 &> make.out

which produced the updated link command:

cd /fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/core/test/KokkosIntegration && /projects/sparc/tools/cmake/3.23.2/x86_64/bin/cmake -E cmake_link_script CMakeFiles/Intercept.dir/link.txt --verbose=1
/projects/sierra/linux_rh7/SDK/mpi/openmpi/4.0.3-nvidia-10.1.243-RHEL7/bin/mpicxx -fPIC      -expt-extended-lambda -arch=sm_70  -O3 -DNDEBUG -shared -Wl,-soname,libIntercept.so.13 -o libIntercept.so.13.5 CMakeFiles/Intercept.dir/Intercept.cpp.o  -Wl,-rpath,/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/core/ext:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/core/inout:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/core/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/core/compat:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/epetra/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/tsqr/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/remainder/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/kokkoscomm/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/kokkoscompat/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos-kernels/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/algorithms/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/containers/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/numerics/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/comm/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/parameterlist/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/parser/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/core/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/core/src:/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64:/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64 ../../ext/libtpetraext.so.13.5 ../../inout/libtpetrainout.so.13.5 ../../src/libtpetra.so.13.5 ../../compat/libtpetraclassic.so.13.5 ../../../../epetra/src/libepetra.so.13.5 ../../../tsqr/src/libkokkostsqr.so.13.5 ../../../../teuchos/remainder/src/libteuchosremainder.so.13.5 ../../../../teuchos/kokkoscomm/src/libteuchoskokkoscomm.so.13.5 ../../../../teuchos/kokkoscompat/src/libteuchoskokkoscompat.so.13.5 ../../../../kokkos-kernels/src/libkokkoskernels.so.13.5 ../../../../kokkos/algorithms/src/libkokkosalgorithms.so.13.5 ../../../../kokkos/containers/src/libkokkoscontainers.so.13.5 /projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcusparse.so /projects/sparc/tpls/cee-v100/parmetis-4.0.3/bbc4da521d670fd9137b3c1e6917090ae52f91af/cee-v100_cuda-10.1.243_gcc-7.2.0_openmpi-4.0.3/lib/libmetis.a /projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcublas.so /projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcusolver.so ../../../../teuchos/numerics/src/libteuchosnumerics.so.13.5 ../../../../teuchos/comm/src/libteuchoscomm.so.13.5 ../../../../teuchos/parameterlist/src/libteuchosparameterlist.so.13.5 ../../../../teuchos/parser/src/libteuchosparser.so.13.5 ../../../../teuchos/core/src/libteuchoscore.so.13.5 ../../../../kokkos/core/src/libkokkoscore.so.13.5 -ldl /usr/lib64/libbfd.so /usr/lib64/libiberty.a /projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_intel_lp64.so /projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_intel_thread.so /projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_core.so /projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64/libiomp5.so /projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_intel_lp64.so /projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_intel_thread.so /projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_core.so /projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64/libiomp5.so 
g++: error: unrecognized command line option ‘-arch=sm_70’

Now, lets list out the link line arguments, one option per line.

First, here is the flattened out link line for the reference build:

/projects/sierra/linux_rh7/SDK/mpi/openmpi/4.0.3-nvidia-10.1.243-RHEL7/bin/mpicxx
-fPIC
-expt-extended-lambda
-arch=sm_70
-O3
-DNDEBUG
-shared
-Wl,-soname,libIntercept.so.13
-o
libIntercept.so.13.5
CMakeFiles/Intercept.dir/Intercept.cpp.o
-L/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64
-Wl,-rpath,/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/tsqr/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/epetra/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos-kernels/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/remainder/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/kokkoscomm/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/kokkoscompat/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/numerics/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/algorithms/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/containers/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/comm/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/parameterlist/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/parser/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/core/src:/fgs/rabartl/Trilinos.base.ref/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/core/src:/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64:/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64
../../../tsqr/src/libkokkostsqr.so.13.5
../../../../epetra/src/libepetra.so.13.5
../../../../kokkos-kernels/src/libkokkoskernels.so.13.5
../../../../teuchos/remainder/src/libteuchosremainder.so.13.5
../../../../teuchos/kokkoscomm/src/libteuchoskokkoscomm.so.13.5
../../../../teuchos/kokkoscompat/src/libteuchoskokkoscompat.so.13.5
../../../../teuchos/numerics/src/libteuchosnumerics.so.13.5
../../../../kokkos/algorithms/src/libkokkosalgorithms.so.13.5
../../../../kokkos/containers/src/libkokkoscontainers.so.13.5
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcudart.so
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcublas.so
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcufft.so
/projects/sparc/tpls/cee-v100/parmetis-4.0.3/bbc4da521d670fd9137b3c1e6917090ae52f91af/cee-v100_cuda-10.1.243_gcc-7.2.0_openmpi-4.0.3/lib/libmetis.a
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcusparse.so
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcusolver.so
../../../../teuchos/comm/src/libteuchoscomm.so.13.5
../../../../teuchos/parameterlist/src/libteuchosparameterlist.so.13.5
../../../../teuchos/parser/src/libteuchosparser.so.13.5
../../../../teuchos/core/src/libteuchoscore.so.13.5
../../../../kokkos/core/src/libkokkoscore.so.13.5
-ldl
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcudart.so
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcublas.so
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcufft.so
-lbfd
/usr/lib64/libiberty.a
-lmkl_intel_lp64
-lmkl_intel_thread
-lmkl_core
/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64/libiomp5.so
-lmkl_intel_lp64
-lmkl_intel_thread
-lmkl_core
/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64/libiomp5.so

Now, here is the flattened out link line for the updated build:

/projects/sierra/linux_rh7/SDK/mpi/openmpi/4.0.3-nvidia-10.1.243-RHEL7/bin/mpicxx
-fPIC
-expt-extended-lambda
-arch=sm_70
-O3
-DNDEBUG
-shared
-Wl,-soname,libIntercept.so.13
-o
libIntercept.so.13.5
CMakeFiles/Intercept.dir/Intercept.cpp.o
-Wl,-rpath,/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/core/ext:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/core/inout:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/core/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/core/compat:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/epetra/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/tpetra/tsqr/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/remainder/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/kokkoscomm/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/kokkoscompat/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos-kernels/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/algorithms/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/containers/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/numerics/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/comm/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/parameterlist/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/parser/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/teuchos/core/src:/fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/cee-rhel7_cuda-10.1.243_gnu-7.2.0_openmpi-4.0.3_shared_opt/packages/kokkos/core/src:/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64:/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64
../../ext/libtpetraext.so.13.5
../../inout/libtpetrainout.so.13.5
../../src/libtpetra.so.13.5
../../compat/libtpetraclassic.so.13.5
../../../../epetra/src/libepetra.so.13.5
../../../tsqr/src/libkokkostsqr.so.13.5
../../../../teuchos/remainder/src/libteuchosremainder.so.13.5
../../../../teuchos/kokkoscomm/src/libteuchoskokkoscomm.so.13.5
../../../../teuchos/kokkoscompat/src/libteuchoskokkoscompat.so.13.5
../../../../kokkos-kernels/src/libkokkoskernels.so.13.5
../../../../kokkos/algorithms/src/libkokkosalgorithms.so.13.5
../../../../kokkos/containers/src/libkokkoscontainers.so.13.5
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcusparse.so
/projects/sparc/tpls/cee-v100/parmetis-4.0.3/bbc4da521d670fd9137b3c1e6917090ae52f91af/cee-v100_cuda-10.1.243_gcc-7.2.0_openmpi-4.0.3/lib/libmetis.a
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcublas.so
/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcusolver.so
../../../../teuchos/numerics/src/libteuchosnumerics.so.13.5
../../../../teuchos/comm/src/libteuchoscomm.so.13.5
../../../../teuchos/parameterlist/src/libteuchosparameterlist.so.13.5
../../../../teuchos/parser/src/libteuchosparser.so.13.5
../../../../teuchos/core/src/libteuchoscore.so.13.5
../../../../kokkos/core/src/libkokkoscore.so.13.5
-ldl
/usr/lib64/libbfd.so
/usr/lib64/libiberty.a
/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_intel_lp64.so
/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_intel_thread.so
/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_core.so
/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64/libiomp5.so
/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_intel_lp64.so
/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_intel_thread.so
/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/mkl/lib/intel64/libmkl_core.so
/projects/sierra/linux_rh7/SDK/compilers/intel/composer_xe_2017.1.132/compilers_and_libraries/linux/lib/intel64/libiomp5.so

Comparing these two link lines, they are very different. The order of some of the libraries is different and even what libraries are listed and how they are listed on the link line is different.

So it turns out that having:

/projects/sierra/linux_rh7/SDK/compilers/nvidia/cuda_10.1.243/lib64/libcudart.so

on the link line is critical. In the reference build, that comes in through find_package(CUDA) and the libraries:

set(TPL_CUDA_INCLUDE_DIRS ${CUDA_TOOLKIT_INCLUDE})
set(TPL_CUDA_LIBRARIES ${CUDA_CUDART_LIBRARY} ${CUDA_cublas_LIBRARY}
   ${CUDA_cufft_LIBRARY})

But the problem is that when I updated the tribits/core/std_tpls/FindTPLCUDA.cmake file, I discarded those library by putting

tribits_tpl_find_include_dirs_and_libraries(CUDA)

and the end.

The fix was simple, just allow those libs to be used by changing this to:

tribits_tpl_find_include_dirs_and_libraries(CUDA
  REQUIRED_LIBS_NAMES  willNotBeUsed)

unset(TPL_CUDA_INCLUDE_DIRS)
unset(TPL_CUDA_LIBRARIES)

And in fact, I significantly simplified that file in TriBITSPub/TriBITS#503 taking out the found check since find_package(CUDA REQUIRED will abort the configure if it is not found.

I was hasty and put Krino in the wrong disable list. I had put it in the list for extra disables for complex builds.

…#10524, #10774, #10791) Pulls in correct disable of Krino for ATDM Trilinos builds (#10524) This pulls in the updated branch from PR #10791 which works to addresses

Origin repo remote tracking branch: 'github/master' Origin repo remote repo URL: 'github = git@github.com:TriBITSPub/TriBITS.git' Git describe: Vera4.0-RC1-start-1224-g46b634b9 At commit: commit 1ecbb99ecf5615b8d06fd1cc16c8d8ee02d65888 Author: Roscoe A. Bartlett <rabartl@sandia.gov> Date: Mon Jul 25 13:07:08 2022 -0600 Summary: Change type to IMPORTED STATIC for *.a file (trilinos#10774)

…ilinos#10774)

bartlettroscoe · 2022-07-26T02:43:24Z

With the merge of this branch to 'atdm-nightly-manual-updates' in commit 36e4968, we should hopefully see all of the new ATDM Trilinos failures caused by the merge of #10614 resolved (and also see the Krino errors go away).

bartlettroscoe · 2022-07-26T12:13:56Z

FYI: With the update to the 'atdm-nightly' branch yesterday, the all of the 'ats1' configurations on 'mutrino' now all build successfully as shown for the ATDM Trilinos builds today 2022-07-26. There are 6 new test failures for for the build Trilinos-atdm-ats1-hsw_intel-19.0.4_mpich-7.7.15_openmp_static_opt but they all show srun creation failures:

srun: Job 27675822 step creation temporarily disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)
srun: Job 27675822 step creation still disabled, retrying (Requested nodes are busy)

This looks like failures we have seen before on 'mutrino' as reported in #3942 and #3499. Not sure if this is related to the TriBITS updates or some other changes or if this is just a fluke.

As for the 4 tests failing in the build Trilinos-atdm-ats1-knl_intel-19.0.4_mpich-7.7.15_openmp_static_opt, those tests were failing before the TriBITS upgrade as shown in this query and comparing the test failures on testing day 2022-07-18 and those on
testing day 2022-07-26.

bartlettroscoe · 2022-07-26T12:17:10Z

All of the new ATDM Trilinos build errors due to the TriBITS upgrade from #10614 now appear to be resolved as of today, ATDM Trilinos testing day 2022-07-26. The only remaining failures are those that already existed which include configure errors for three SPARC 'mini' builds and build errors for the 'tlcc2' builds as reported at the top of #10774.

So this PR is ready to merge and it fixes all of the ATDM Trilinos builds.

bartlettroscoe · 2022-07-26T12:20:01Z

Here are the notes for my local builds reproducing and fixing the CGNS/HDF5 link errors I had above.

I was able to reproduce the CGNS/HDF5 link errors described inhttps://github.com//issues/10774#issuecomment-1191702159 and then verify the fix on the machine 'ceerws1113' with the build cee-rhel7_intel-19.0.3_intelmpi-2018.4_serial_static_opt. Details are in expanded section below.

'cee-rhel7_intel-19.0.3_intelmpi-2018.4_serial_static_opt' build on 'ceerws1113' (click to expand)

For an earlier version of this branch (before putting this into TriBITS proper and snapshotting TriBITS 'master' back in):

$ git log-short --name-status HEAD --not github/develop
07bae560f32 "WIP: Correctly handle abs dir for findmod for TPL dependencies file (#10774)"
Author: Roscoe A. Bartlett <rabartl@sandia.gov>
Date:   Thu Jul 21 11:00:55 2022 -0600 (5 hours ago)

M       cmake/tribits/core/package_arch/TribitsReadDepsFilesCreateDepsGraph.cmake

d740429a585 "Add dependency of CGNS on HDF5 (#10774)"
Author: Roscoe A. Bartlett <rabartl@sandia.gov>
Date:   Thu Jul 21 10:35:22 2022 -0600 (5 hours ago)

A       cmake/tribits/common_tpls/FindTPLCGNSDependencies.cmake

39965623e25 "Disable Krino in ATDM Trilinos builds (#10524)"
Author: Roscoe A. Bartlett <rabartl@sandia.gov>
Date:   Thu Jul 21 10:14:14 2022 -0600 (6 hours ago)

M       cmake/std/atdm/ATDMDisables.cmake

On 'ceerws1113' I ran:

$ ssh ceerws1113

$ cd /fgs/rabartl/Trilinos.base/BUILDS/ATDM/CHECKIN/

$ env \
    ATDM_CONFIG_BUILD_COUNT_OVERRIDE=24 \
    ATDM_CONFIG_CTEST_PARALLEL_LEVEL_OVERIDE=16 \
  ./checkin-test-atdm-cee-rhel7.sh \
    cee-rhel7_intel-19.0.3_intelmpi-2018.4_serial_static_opt \
    --enable-all-packages=on --local-do-all

$ grep -A 100 "failed out of" cee-rhel7_intel-19.0.3_intelmpi-2018.4_serial_static_opt/ctest.out 
100% tests passed, 0 tests failed out of 2511

Subproject Time Summary:
Adelus                     =   4.58 sec*proc (4 tests)
Amesos2                    =  13.64 sec*proc (8 tests)
Belos                      = 153.18 sec*proc (144 tests)
Ifpack2                    =  47.41 sec*proc (53 tests)
Intrepid2                  = 322.66 sec*proc (183 tests)
Kokkos                     =  97.46 sec*proc (39 tests)
KokkosKernels              =  96.73 sec*proc (17 tests)
Krino                      =   5.33 sec*proc (1 test)
MueLu                      = 298.76 sec*proc (113 tests)
NOX                        = 154.86 sec*proc (110 tests)
Panzer                     = 2402.23 sec*proc (218 tests)
Phalanx                    =  12.06 sec*proc (36 tests)
ROL                        = 753.13 sec*proc (207 tests)
Rythmos                    =  48.12 sec*proc (83 tests)
SEACAS                     = 129.70 sec*proc (66 tests)
STK                        =   4.34 sec*proc (1 test)
Sacado                     =  42.73 sec*proc (299 tests)
ShyLU_Node                 =   4.59 sec*proc (1 test)
Stratimikos                =  85.10 sec*proc (41 tests)
Teko                       = 145.51 sec*proc (18 tests)
Tempus                     = 293.13 sec*proc (157 tests)
Teuchos                    =  60.93 sec*proc (140 tests)
Thyra                      =  27.32 sec*proc (82 tests)
Tpetra                     = 183.74 sec*proc (271 tests)
TrilinosATDMConfigTests    =  91.91 sec*proc (12 tests)
TrilinosBuildStats         =   4.47 sec*proc (2 tests)
Xpetra                     =  10.11 sec*proc (19 tests)
Zoltan2                    = 156.05 sec*proc (186 tests)

Total Test time (real) = 382.54 sec

Note that the build failed the first time due to a compiler crash and I finished running the build and tests with:

$ cd cee-rhel7_intel-19.0.3_intelmpi-2018.4_serial_static_opt/

$ time make NP=24 &> make.out
real    19m2.040s
user    372m48.994s
sys     34m21.185s

$ time ctest -j16 &> ctest.out 

real    6m22.668s
user    154m58.596s
sys     16m38.432s

I tested the other changes in this PR in:

bartlettroscoe · 2022-07-26T12:26:05Z

@rppawlo and @keitat,

Can one of you please approve this PR to allow it to merge to the Trilinos 'develop' branch? I have verified it fixes all of the ATDM Trilinos build errors caused by the initial merge of #10614. (That was verified by manually merging this topic branch to the 'atdm-nightly' branch and watching the ATDM Trilinos builds as described above).

This fixes the SPARC Trilinos Integration builds and merging this will allow SPARC to upgrade to a new version of Trilinos 'develop'.

This will also likely fix many other customer builds of Trilinos on various platforms, especially CUDA builds on some platforms.

trilinos-autotester · 2022-08-06T10:20:23Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2022-08-06T10:22:22Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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Using Repos:

Repo: TRILINOS (bartlettroscoe/Trilinos)

Pull Request Author: bartlettroscoe

trilinos-autotester · 2022-08-06T16:28:52Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 793
Status: PASSED

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CDash Test Results for PR# 10791.

Wiki: How to Reproduce PR Testing Builds and Errors.

trilinos-autotester · 2022-08-08T10:03:14Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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Using Repos:

Repo: TRILINOS (bartlettroscoe/Trilinos)

Pull Request Author: bartlettroscoe

trilinos-autotester · 2022-08-08T16:01:48Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

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CDash Test Results for PR# 10791.

Wiki: How to Reproduce PR Testing Builds and Errors.

…lds (trilinos#10791, trilinos#10840) I am manually merging the tip of 'develop' into this topic branch so that I can see if the PR testing results change (see trilinos#10840).

bartlettroscoe · 2022-08-08T18:30:37Z

FYI: I pushed commit ef3b195 to see if this changes the results as per #10840.

bartlettroscoe · 2022-08-09T16:49:18Z

FYI: I created the issue TRILINOSHD-156 requesting:

Hello Trilinos Framework team,

Can someone please manually merge the PR:

#10791

It fixes issues for several customers. It is approved to be merged and it passed both of its PR testing iterations except for a randomly failing Tpetra that is impacting several PRs (and therefore the failure has nothing to do with the changes in PR #10791, see: #10847).

With the logjam going on with PR testing over the last several weeks and given that it takes upwards of 3 days to more to get a PR build to run, one can argue that merging PRs that are clearly okay to merge and remove them from PR testing is a good thing to do.

Thanks,

-Ross

trilinos-autotester · 2022-08-10T09:08:16Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2022-08-10T09:08:21Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

trilinos-autotester · 2022-08-10T09:10:18Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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TRILINOS_NODE_LABEL	trilinos-any
TRILINOS_SOURCE_BRANCH	10774-fix-atdm-builds
TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_cuda-10.1.243

Build Num: 846
Status: STARTED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	ats2_cuda-10.1.243-gnu-8.3.1-spmpi-rolling_release_static_Volta70_Power9_no-asan_no-complex_no-fpic_mpi_pt_no-rdc_uvm_deprecated-on_no-package-enables
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TRILINOS_SOURCE_BRANCH	10774-fix-atdm-builds
TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_python3

Build Num: 660
Status: STARTED

Jenkins Parameters

Parameter Name	Value
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GENCONFIG_BUILD_NAME	rhel7_sems-gnu-7.2.0-anaconda3-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_pr-framework
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PULLREQUEST_CDASH_TRACK	Pull Request
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TRILINOS_SOURCE_BRANCH	10774-fix-atdm-builds
TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

Build Num: 366
Status: STARTED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-cuda-11.4.2-sems-gnu-10.1.0-sems-openmpi-4.0.5_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_no-uvm_deprecated-on_no-package-enables
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PULLREQUEST_CDASH_TRACK	Pull Request
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TRILINOS_NODE_LABEL	GPU
TRILINOS_SOURCE_BRANCH	10774-fix-atdm-builds
TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Using Repos:

Repo: TRILINOS (bartlettroscoe/Trilinos)

Pull Request Author: bartlettroscoe

trilinos-autotester · 2022-08-10T15:04:40Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 830
Status: PASSED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-gnu-8.3.0-openmpi-1.10.1-openmp_release-debug_static_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS	AT: RETEST;TriBITS
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TRILINOS_SOURCE_BRANCH	10774-fix-atdm-builds
TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_gcc-7.2.0-serial

Build Num: 831
Status: PASSED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-gnu-7.2.0-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
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TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
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TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_gcc-7.2.0-debug

Build Num: 829
Status: FAILED

Jenkins Parameters

Parameter Name	Value
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GENCONFIG_BUILD_NAME	rhel7_sems-gnu-7.2.0-openmpi-1.10.1-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
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TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_intel-17.0.1

Build Num: 830
Status: FAILED

Jenkins Parameters

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GENCONFIG_BUILD_NAME	rhel7_sems-intel-17.0.1-mpich-3.2-serial_release-debug_static_no-kokkos-arch_no-asan_no-complex_fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
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TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_clang-10.0.0

Build Num: 834
Status: PASSED

Jenkins Parameters

Parameter Name	Value
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GENCONFIG_BUILD_NAME	rhel7_sems-clang-10.0.0-openmpi-1.10.1-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
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PULLREQUEST_CDASH_TRACK	Pull Request
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TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_cuda-10.1.243

Build Num: 846
Status: FAILED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	ats2_cuda-10.1.243-gnu-8.3.1-spmpi-rolling_release_static_Volta70_Power9_no-asan_no-complex_no-fpic_mpi_pt_no-rdc_uvm_deprecated-on_no-package-enables
PR_LABELS	AT: RETEST;TriBITS
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TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_python3

Build Num: 660
Status: PASSED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-gnu-7.2.0-anaconda3-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_pr-framework
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TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

Build Num: 366
Status: FAILED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-cuda-11.4.2-sems-gnu-10.1.0-sems-openmpi-4.0.5_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS	AT: RETEST;TriBITS
PULLREQUESTNUM	10791
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TEST_REPO_ALIAS	TRILINOS
TRILINOS_NODE_LABEL	GPU
TRILINOS_SOURCE_BRANCH	10774-fix-atdm-builds
TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

CDash Test Results for PR# 10791.

Wiki: How to Reproduce PR Testing Builds and Errors.

trilinos-autotester · 2022-08-12T02:18:36Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 848
Status: STARTED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-gnu-8.3.0-openmpi-1.10.1-openmp_release-debug_static_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS	TriBITS
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PULLREQUEST_CDASH_TRACK	Pull Request
TEST_REPO_ALIAS	TRILINOS
TRILINOS_NODE_LABEL	trilinos-any
TRILINOS_SOURCE_BRANCH	10774-fix-atdm-builds
TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_gcc-7.2.0-serial

Build Num: 849
Status: STARTED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-gnu-7.2.0-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
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TRILINOS_NODE_LABEL	trilinos-any
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TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_gcc-7.2.0-debug

Build Num: 847
Status: STARTED

Jenkins Parameters

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GENCONFIG_BUILD_NAME	rhel7_sems-gnu-7.2.0-openmpi-1.10.1-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
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TRILINOS_NODE_LABEL	trilinos-any
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TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_intel-17.0.1

Build Num: 848
Status: STARTED

Jenkins Parameters

Parameter Name	Value
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GENCONFIG_BUILD_NAME	rhel7_sems-intel-17.0.1-mpich-3.2-serial_release-debug_static_no-kokkos-arch_no-asan_no-complex_fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
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TRILINOS_SOURCE_BRANCH	10774-fix-atdm-builds
TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_clang-10.0.0

Build Num: 852
Status: STARTED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-clang-10.0.0-openmpi-1.10.1-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS	TriBITS
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PULLREQUEST_CDASH_TRACK	Pull Request
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TRILINOS_SOURCE_BRANCH	10774-fix-atdm-builds
TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_cuda-10.1.243

Build Num: 864
Status: STARTED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	ats2_cuda-10.1.243-gnu-8.3.1-spmpi-rolling_release_static_Volta70_Power9_no-asan_no-complex_no-fpic_mpi_pt_no-rdc_uvm_deprecated-on_no-package-enables
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TRILINOS_NODE_LABEL	vortex
TRILINOS_SOURCE_BRANCH	10774-fix-atdm-builds
TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
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Build Information

Test Name: Trilinos_PR_python3

Build Num: 677
Status: STARTED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-gnu-7.2.0-anaconda3-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_pr-framework
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TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
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Build Information

Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

Build Num: 384
Status: STARTED

Jenkins Parameters

Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-cuda-11.4.2-sems-gnu-10.1.0-sems-openmpi-4.0.5_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS	TriBITS
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TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Using Repos:

Repo: TRILINOS (bartlettroscoe/Trilinos)

Pull Request Author: bartlettroscoe

trilinos-autotester · 2022-08-12T02:55:51Z

NOTICE: The AutoTester has encountered an internal error (usually a Communications Timeout), testing will be restarted, previous tests may still be running but will be ignored by the AutoTester...

trilinos-autotester · 2022-08-12T02:57:50Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 849
Status: STARTED

Jenkins Parameters

Parameter Name	Value
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GENCONFIG_BUILD_NAME	rhel7_sems-gnu-8.3.0-openmpi-1.10.1-openmp_release-debug_static_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS	TriBITS
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PULLREQUEST_CDASH_TRACK	Pull Request
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TRILINOS_SOURCE_BRANCH	10774-fix-atdm-builds
TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_gcc-7.2.0-serial

Build Num: 850
Status: STARTED

Jenkins Parameters

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GENCONFIG_BUILD_NAME	rhel7_sems-gnu-7.2.0-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
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TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_gcc-7.2.0-debug

Build Num: 848
Status: STARTED

Jenkins Parameters

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GENCONFIG_BUILD_NAME	rhel7_sems-gnu-7.2.0-openmpi-1.10.1-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS	TriBITS
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TRILINOS_NODE_LABEL	trilinos-any
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TRILINOS_SOURCE_REPO	https://github.com/bartlettroscoe/Trilinos
TRILINOS_SOURCE_SHA	`ef3b195`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`35b4d4d`

Build Information

Test Name: Trilinos_PR_intel-17.0.1

Build Num: 849
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Using Repos:

Repo: TRILINOS (bartlettroscoe/Trilinos)

Pull Request Author: bartlettroscoe

trilinos-autotester · 2022-08-12T08:51:23Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

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CDash Test Results for PR# 10791.

trilinos-autotester · 2022-08-12T08:51:41Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
THE LAST COMMIT TO THIS PULL REQUEST HAS NOT BEEN REVIEWED YET!

trilinos-autotester · 2022-08-12T08:51:47Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

bartlettroscoe · 2022-08-12T18:35:36Z

NOTE: The branch 10774-install-run-demo for PR #10813 was created from this PR branch bartlettroscoe:10774-fix-atdm-builds. All of the unique commits on this PR shown here with the top unique commit 042bdd7 as shown as the initial commits in the branch bartlettroscoe:10774-install-run-demo for PR #10813 shown here (again, the same commit 042bdd7 is shown in the PR #10813).

Therefore, when PR #10813 was merged, it effectively merged this PR branch.

SIDE NOTE: I have no idea why GitHub is showing a conflict with the file make/tribits/core/package_arch/TribitsExternalPackageWriteConfigFile.cmake:

When I merge this topic branch with 'develop' locally, it merges fine as shown by:

$ cd Trilinos/

$ git checkout 10774-fix-atdm-builds

$ git log-short --name-status -1
ef3b1957e41 "Merge remote-tracking branch 'github/develop' into 10774-fix-atdm-builds (#10791, #10840)"
Author: Roscoe A. Bartlett <rabartl@sandia.gov>
Date:   Mon Aug 8 12:23:19 2022 -0600 (4 days ago)

$ git fetch github

$ git log-short --name-status -1 github/develop
e061ffc182a "Merge Pull Request #10813 from bartlettroscoe/Trilinos/10774-install-run-demo"
Author: trilinos-autotester <trilinos@sandia.gov>
Date:   Fri Aug 12 08:52:45 2022 -0600 (4 hours ago)

$ git merge --no-edit github/develop

$ git log -1
commit ea6c74261caaac6f5f727a8f012007208f5e1c2c (HEAD -> 10774-fix-atdm-builds)
Merge: ef3b1957e41 e061ffc182a
Author: Roscoe A. Bartlett <rabartl@sandia.gov>
Date:   Fri Aug 12 12:32:15 2022 -0600

    Merge remote-tracking branch 'github/develop' into 10774-fix-atdm-builds

So, in other words, GitHub seems to have a defect so we can ignore this.

Therefore, because all of the unique commits from this PR were merged along with PR #10813, we can close this PR and mark it as merged.

bartlettroscoe added 3 commits July 21, 2022 10:14

Disable Krino in ATDM Trilinos builds (trilinos#10524)

3996562

The ATDM customers don't need Krino and it has been failing the build for all recorded time on CDash since the package was first added (see trilinos#10524).

Merge branch 'tribits_github_snapshot' into 10774-fix-atdm-builds (tr…

c651bff

…ilinos#10774) Brings in PR TriBITSPub/TriBITS#502

bartlettroscoe added AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) TriBITS Issues with the TriBITS framework itself, not usage of the TriBITS framework labels Jul 21, 2022

bartlettroscoe self-assigned this Jul 21, 2022

bartlettroscoe added a commit that referenced this pull request Jul 21, 2022

Merge branch '10774-fix-atdm-builds' into atdm-nightly-manual-updates (…

142947a

…#10744, #10791) Merge the current status of the topic branch in PR #10791 so we can get this into ATDM Trilinos nightly testing.

bartlettroscoe added 2 commits July 21, 2022 21:24

Merge branch 'tribits_github_snapshot' into 10774-fix-atdm-builds (tr…

119c58b

…ilinos#10774)

bartlettroscoe added a commit that referenced this pull request Jul 22, 2022

Merge branch '10774-fix-atdm-builds' into atdm-nightly (#10774, #10791)

bd772e6

Disable Krino in all ATDM Trilinos builds for real (trilinos#10524)

b6fdda0

I was hasty and put Krino in the wrong disable list. I had put it in the list for extra disables for complex builds.

bartlettroscoe mentioned this pull request Jul 22, 2022

Address failures from merge of updated TriBITS (#10614, TriBITSPub/TriBITS#299) #10774

Closed

14 tasks

bartlettroscoe added 2 commits July 25, 2022 20:19

Merge branch 'tribits_github_snapshot' into 10774-fix-atdm-builds (tr…

042bdd7

…ilinos#10774)

bartlettroscoe force-pushed the 10774-fix-atdm-builds branch from dbc3946 to 042bdd7 Compare July 26, 2022 02:21

bartlettroscoe changed the title ~~WIP: Fix ATDM Trilinos builds broken by TriBITS update (#10774)~~ Fix ATDM Trilinos builds broken by TriBITS update (#10774) Jul 26, 2022

bartlettroscoe removed the AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) label Jul 26, 2022

bartlettroscoe requested review from rppawlo and keitat July 26, 2022 12:20

rppawlo approved these changes Jul 26, 2022

View reviewed changes

keitat approved these changes Jul 26, 2022

View reviewed changes

bartlettroscoe added the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Aug 5, 2022

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Aug 6, 2022

bartlettroscoe added AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration and removed AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed labels Aug 8, 2022

bartlettroscoe mentioned this pull request Aug 8, 2022

Framework: PR autotester is incorrectly testing against old version of 'develop' #10840

Open

Merge remote-tracking branch 'github/develop' into 10774-fix-atdm-bui…

ef3b195

…lds (trilinos#10791, trilinos#10840) I am manually merging the tip of 'develop' into this topic branch so that I can see if the PR testing results change (see trilinos#10840).

bartlettroscoe mentioned this pull request Aug 9, 2022

TpetraTSQR_SequentialTsqr_[non]contiguousCacheBlocks_MPI_1 tests failing randomly with 'illegal instruction was encountered' in PR rhel7_sems-cuda-11.4.2-sems-gnu-10.1.0-sems-openmpi-4.0.5_release builds starting 2022-07-20 #10847

Closed

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Aug 10, 2022

bartlettroscoe closed this Aug 12, 2022

bartlettroscoe changed the title ~~Fix ATDM Trilinos builds broken by TriBITS update (#10774)~~ IMPLICITLY MERGED: Fix ATDM Trilinos builds broken by TriBITS update (#10774) Aug 12, 2022

bartlettroscoe mentioned this pull request Aug 25, 2022

Broken tests on Weaver sandialabs/Albany#822

Closed

IMPLICITLY MERGED: Fix ATDM Trilinos builds broken by TriBITS update (#10774) #10791

IMPLICITLY MERGED: Fix ATDM Trilinos builds broken by TriBITS update (#10774) #10791

Conversation

bartlettroscoe commented Jul 21, 2022 • edited Loading

Internal issues

Description

Testing

bartlettroscoe commented Jul 22, 2022 • edited Loading

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bartlettroscoe commented Jul 26, 2022

bartlettroscoe commented Jul 26, 2022

trilinos-autotester commented Aug 6, 2022

trilinos-autotester commented Aug 6, 2022

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Using Repos:

trilinos-autotester commented Aug 6, 2022

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trilinos-autotester commented Aug 8, 2022

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bartlettroscoe commented Jul 21, 2022 •

edited

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bartlettroscoe commented Jul 22, 2022 •

edited

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