gen3sdk-python 4.23.0 compatibility updates

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.0.3

Notes to tag/commit: 5d3e54c

Generated: 2024-02-08

Dependency Updates

• flask = "^2.3.3" (#374)

Deployment Changes

5.0.3

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.0.2

Notes to tag/commit: 575d497

Generated: 2023-11-14

Improvements

• fixes to documentation (dataguids URL and swagger URL) (#364)

Dependency Updates

• Upgrade Flask (#371)

5.0.2

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.0.1

Notes to tag/commit: 5.0.2

Generated: 2023-10-02

Bug Fixes

• Add version endpoint now works with content_create_date and
  content_update_date. (#365)

5.0.1

Release Notes

For: uc-cdis/indexd

Notes since tag: 5.0.0

Notes to tag/commit: 5.0.1

Generated: 2023-06-09

Bug Fixes

• Indexd records no longer return empty strings for content_updated_date and
  content_updated_time when not provided. (#361)

5.0.0

Release Notes

For: uc-cdis/indexd

Notes since tag: 4.1.0

Notes to tag/commit: 5.0.0

Generated: 2023-05-30

Dependency Updates

• Allow any Python 3.9.* (#360)

New Features

• Adds description, content_updated_time and content_created_time to
  IndexRecord. (#357)
• DRS responses now map updated_time and created_time to the underlying
  content's updated and created times. (#357)
• DRS responses now include index_created_time and index_updated_time to
  denote the time they were indexed and the time their index record was
  changed. These fields replace the previous updated_time and created_time in
  older indexd versions. (#357)

Breaking Changes

• DRS responses for update_time and created_time reflect the content's
  updated and created times, not the time they were indexed or their index
  record was updated. (#357)

Bug Fixes

• Fix the routing to the alias endpoint (This fixes data submission in helm)
  (#358)

Deployment Changes

• New columns added to index_record table. Alembic migration needed. (#357)

Additional DRS endpoint and Alembic migrations

Release Notes

For: uc-cdis/indexd

Notes since tag: 4.0.2

Notes to tag/commit: 5f0435b

Generated: 2023-04-17

New Features

• Add GA4GH DRS /service-info endpoint (#356)
• Use Alembic for database migrations (#354)
• Adds description field when creating/updating records. (#348)
• Maps indexd description to drs description for drs endpoints. (#348)

Bug Fixes

• Reverting changes that cause existing indexd deployments to break due to
  unhandled DB migration. (#353)
• Fixes issue where updates to a record's description were not reflected.
  (#351)
• DRS response prefers version before rev, if version is not available it
  uses rev (#347)
• Change using eval to json.loads to prevent code injections. (#346)

Improvements

• Remove unnecessary functions from config_helper that are only used by Fence
  (#352)
• Sanitize user input for additional configs. (#346)

Dependency Updates

• Updates indexclient to 2.2.0 (#350)
• indexclient changed to pre-release branch temporarily to satisfy tests the
  require the addition of description to indexclient. (#348)

Deployment Changes

Re-add 4.0.0 changes with fix for test

Release Notes

For: uc-cdis/indexd
Notes since tag: 4.0.1
Notes to tag/commit: a4d9555
Generated: 2022-12-15

Breaking Changes

• Ensure you are using Fence>=2021.10. Remove deprecated GA4GH access
  endpoints. these have existed (and been used) from the Fence microservice
  since last year. See cloud automation change
  here
  (#338)

Improvements

• allow passing of fence config for authz mapping to the acl migration script
  (#338)
• Removing Veracode scanning pipeline (#340)
• Removing Veracode scanning pipeline (#339)

revert 4.0.0 changes temporarily to debug failing test

revert 4.0.0 changes temporarily to debug failing test

remove deprecated endpoints, updated acl->authz migration script

Release Notes

For: uc-cdis/indexd

Notes since tag: 3.5.0

Notes to tag/commit: 98146f5

Generated: 2022-09-28

Breaking Changes

• Ensure you are using Fence>=2021.10. Remove deprecated GA4GH access
  endpoints. these have existed (and been used) from the Fence microservice
  since last year. See cloud automation change
  here
  (#336)

Improvements

• allow passing of fence config for authz mapping to the acl migration script
  (#336)
• Update GET /index/<GUID> error message (#335)

New mint GUID endpoints

Release Notes

For: uc-cdis/indexd
Notes since tag: 3.4.0
Notes to tag/commit: b1eb482
Generated: 2022-06-08

New Features

• new /mint/guid endpoint to return a valid GUID for this instance without
  creating a new record (#290)
• Adding listen queue to uwsgi config. We were seeing issues with large
  instances of indexd (100M) on a large amount of GET requests we had a
  1.5% failure rate. Adding a listen queue solved this. (#332)