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BigQuery export via staged tsv files #60

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@ianfore ianfore commented Dec 8, 2020

  • [ x] Describe what this pull request does.
  • Make sure all tests pass.
  • Maintain or increase test coverage.
  • Black the code.
  • [x ] Test manually.
  • [ x] Remove empty sections below.

New Features

  • Implemented export to BigQuery tables

Improvements

  • more meaningful names for column ids

Dependency updates

Google BiqQuery Python API

Export to bigquery via staged tsv files.
Also changes to tsv export for improved handling of ids.
@ianfore ianfore changed the title BigQuery export via staged tsv fits BigQuery export via staged tsv files Dec 8, 2020
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lgtm-com bot commented Dec 8, 2020

This pull request introduces 1 alert and fixes 1 when merging b4ee8be into 1497bf5 - view on LGTM.com

new alerts:

  • 1 for Unused import

fixed alerts:

  • 1 for Unused import

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ianfore commented Dec 21, 2020

Pushed latest update with a generic parent_id column and parent_type. So far the only PFB sub-table encountered where the parent can be of different types is GTEx sequencing.

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lgtm-com bot commented Dec 21, 2020

This pull request introduces 1 alert and fixes 1 when merging fcc3481 into 1497bf5 - view on LGTM.com

new alerts:

  • 1 for Unused import

fixed alerts:

  • 1 for Unused import

@lgtm-com
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lgtm-com bot commented Dec 21, 2020

This pull request fixes 1 alert when merging 90e98ad into 1497bf5 - view on LGTM.com

fixed alerts:

  • 1 for Unused import

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